PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G21927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28336.1 Da PI: 9.4849 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLC+aeva+iifss+gklye+ss Ro07_G21927 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCEAEVALIIFSSRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 97.8 | 1.6e-32 | 80 | 170 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++es+++e++kL++++e+L r+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+e+l+kke++l + n +Lr kl+ Ro07_G21927 80 AIKQETESWYEEVSKLRAKYESLLRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTQIMTEQMEQLRKKERQLGDLNVQLRVKLQ 170 557899*********************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCE AEVALIIFSS RGKLYEFSSA 60 GMTNTLERYQ RSSFSPHDNA IKQETESWYE EVSKLRAKYE SLLRTQRHLL GEDLGPLSVK 120 ELQNLEKQLE GALAQARQRK TQIMTEQMEQ LRKKERQLGD LNVQLRVKLQ KEGENLKAIQ 180 DFWSSNNAAA GNSNFLHSSQ ASHMDPPPEP ILQIGYHHYV AAEESQDVPK SMAMAAETNF 240 IQGWAER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-101 | MIKC_MADS family protein |