PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G21107
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 354aa    MW: 39853 Da    PI: 5.2194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G21107genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.8e-16126174153
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                  s ++GVr++k  g+W+AeIrdp+++    r +lg++ taeeA  a++ +r k+
  Ro07_G21107 126 SPFRGVRRRK-YGKWAAEIRDPVKG---GRLWLGTYATAEEASHAYETMRSKF 174
                  679****999.8*********7654...7******************999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MPKPLLNQRN NKSNKSSERQ KFRADNEDTK VFTRKVRIMF NDPDATDSSS SSEDEKMETA  60
DYENKKSSKS KRFVREVIHS FFTHSGRAVS CEAPPQTKRM MMGVSVSTAN KTETRTSSGR  120
KQSSSSPFRG VRRRKYGKWA AEIRDPVKGG RLWLGTYATA EEASHAYETM RSKFDEILRE  180
TTTTICSGKN NNDDESNSNH EHLFLLRKAT SLSLEAAAVD SDGRGLLSQQ GIPVSVLDLG  240
ITDSNSIQNG KSADHSDKET IGTENVGQLQ IPLDSSFLNE VFESLYNIEQ QKQQHVFNFV  300
PDEEVNEPIS SLEELGKYFD RIYCSIDDLK ISGFDDQPTN LPDCDFDDIP TINE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.15e-18ERF family protein