PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G20803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 25707 Da PI: 7.8193 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.9e-39 | 33 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ ++++eA+ar++dPvyG+v++i++lqqq+ +l+ae+++l Ro07_G20803 33 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRPDAVLTVCFEAQARLKDPVYGCVAHIFALQQQVVNLQAEISYL 130 7***********************9989********************************************************************99 PP DUF260 98 kee 100 +++ Ro07_G20803 131 QAH 133 986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MNATTTNPSG GGSCGGGGGG SNSGGSGGGS AGPCGACKFL RRKCVAGCIF APYFDSEQGA 60 AHFAAVHKVF GASNVSKLLL HIPAHKRPDA VLTVCFEAQA RLKDPVYGCV AHIFALQQQV 120 VNLQAEISYL QAHLATMELP SPPPPPPPPS SLVTPPPLSI ADLPSASSMP PSYDLSSLFE 180 PMVQPTAWVM QQRALLHNQH HHFGGGSGGS SSGGGGGSGD LQALARELLH RHSASPSGSV 240 PCSEASPSPS LSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 2e-77 | LBD family protein |