PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G20802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23498 Da PI: 7.7291 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.9 | 1.9e-39 | 19 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+aela++ Ro07_G20802 19 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQQVVNLQAELAYV 116 7***********************9989*********************************************************************9 PP DUF260 98 kee 100 +++ Ro07_G20802 117 HAR 119 976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MSSGSTNIAD NGGGSQGGPC GACKFLRRKC LRGCIFAPYF DSDQGTAHFA AVHKVFGASN 60 ASKLLLRIPP HKRLDAVVTL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYVHARL 120 ATLQCLPPPP LPPQTQSLHS SSNIVAPPSD LVPISNLMHL DPLQTQQCAG QEMTSLFNPL 180 DQELIDGEDL QALAREFVCR YLPGVRFRPP GPHQNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 1e-62 | LBD family protein |