PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G20433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NAC | ||||||||
Protein Properties | Length: 748aa MW: 84978.9 Da PI: 4.535 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 75.8 | 1e-23 | 15 | 96 | 5 | 89 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ++F+Pt+++lv ++Lk k++g++ ++ i+e+d+yk+ePwdLp +v++ ++ew+fF+++++ky tg+r+nr+t++gyWk+t ++ Ro07_G20433 15 MKFQPTEQQLV-NFLKMKMDGRDSQF---IPEIDLYKYEPWDLPaLSVAKCSEEWFFFTQNSNKYITGNRSNRQTENGYWKKTCRE 96 79*********.9*********9666...***************657777789*****************************9875 PP | |||||||
2 | NAM | 91 | 2.1e-28 | 138 | 243 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp Gf+F+P++e l+++yL++k++ ++e+d++++eP++Lp +++kew+fF +++ +r+t++gyWk tg+ +++++++++ Ro07_G20433 138 LPEGFKFQPSEERLLNHYLRNKLA---------FPEIDLCRFEPHQLP----ESDKEWFFFNRQR---------RRTTEHGYWKITGNGRKIKASDKS 213 699*****************9975.........567899********9....4689*****8754.........57999******************* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g ++++fykgrap+g+kt Wv+hey+l Ro07_G20433 214 IIGKMRIMTFYKGRAPDGRKTGWVIHEYSL 243 ****************************97 PP | |||||||
3 | NAM | 39.2 | 2.2e-12 | 419 | 465 | 2 | 49 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 p G+ FhP+d+ l+++yL+kk eg + ++ ++i+e+d++k+eP+dLp Ro07_G20433 419 PEGVGFHPSDKKLLCHYLAKKNEGMDSQI-TIIPEIDLCKHEPRDLPG 465 89************************999.89**************94 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence |
MRIALSTYIN VKEDMKFQPT EQQLVNFLKM KMDGRDSQFI PEIDLYKYEP WDLPALSVAK 60 CSEEWFFFTQ NSNKYITGNR SNRQTENGYW KKTCRELPTN LVLCRIKWNS EGSSHEDSNN 120 SIACFDTEEI EMTATFTLPE GFKFQPSEER LLNHYLRNKL AFPEIDLCRF EPHQLPESDK 180 EWFFFNRQRR RTTEHGYWKI TGNGRKIKAS DKSIIGKMRI MTFYKGRAPD GRKTGWVIHE 240 YSLLPNDNNQ LFDPPEVNLD SLFPPLQPQD YRPILQSPIS TELGNVPHAN VYYSECIKWQ 300 CAFGNDDSYF GHIKRNSSQD HDKPPRMYSE LGDALHNIEC NELQSPLEDN DSSLREFLNT 360 SIADQDYYSS EETAQTPLKD SNPPKSYDGN SGSNQNEHSS KSAATFKVRE MNSSCITIPE 420 GVGFHPSDKK LLCHYLAKKN EGMDSQITII PEIDLCKHEP RDLPGDFVLC RLKNNSGQFD 480 HEPIWDEAEP SSGSCSMIST VENQAAAKGN HDEAEPGIAS DLEIQAASND TLTEAELNLA 540 FTAMIEKLLD DYELENLNSL PPQPQPPPPH PHELPQPQDY HHSALQSPIY QQPGNVSHAT 600 NVGNDESRKR DYPFGDNDPS LTKKNNISTN DDDDELGRNT ASSSENQAAV GIPEGYSQPV 660 ANLGSVFDSF PPINREPRDF SYDNDFIEWD DLPNLVEDIG YPLAYEVSSD RNTEVANGSV 720 KDYSALANEN VKGDLVIIRL LQMVQTSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 5e-28 | NAC family protein |