PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G20427

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 525aa MW: 57674 Da PI: 4.5583

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G20427	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	39.9	1.3e-12	10	61	3	56
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek 56 +GfrFhP+ eel+++yL+kk +g++ +++++i+e++ +k+eP+ Lp +vka + Ro07_G20427 10 KGFRFHPSVEELLCHYLEKKNQGSTdSQITHIIPEIGACKHEPRALP-EVKA--S 61 7********************996666777************9.3322..3 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MISSRTTIRK GFRFHPSVEE LLCHYLEKKN QGSTDSQITH IIPEIGACKH EPRALPEVKA 60 SFVLHFCSTG VHNGRISGQG DLLFLHAVNK SDKFDHDKDA PFFDGGEPGS GSSSMASNIE 120 NQAASNDMIT EAEEFLTYKK LGDAVQIPNG KEHTGSCPID KNELSNSVEG QLDSCNQSYS 180 DMIDELLDDV KNLDSLFLQG PPPQPHQLPQ PHPPIYEQLG NVSHSTNVSN DESRKRNYPF 240 GDNDPSLTKK KKNTSADDDD ELGSKTASNS ENQAVAKGMA TEAEENQASK ELGNVSNGNH 300 DEAEPRSHML TEEEEIQAFQ ELRKLLDDHE PENLDPLFPQ PPPPQPHQLP QPPPPQNYHP 360 STLQSPIYEQ LGNVSHSTNV SNDESHKRNC PFGDTGPSRT KKNNISTDDD DELGSNTASN 420 SENQAAHGIP EEYSQPEANL GLVLWDQPHA LLSIYGGPRD LFQNNIFIEL DDLPSSFGDI 480 GSFLAKFSDI IDRSSGVSRD RNTEVAHGSV KDYSALPIGA TLQCK

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MISSRTTIRK GFRFHPSVEE LLCHYLEKKN QGSTDSQITH IIPEIGACKH EPRALPEVKA  60
SFVLHFCSTG VHNGRISGQG DLLFLHAVNK SDKFDHDKDA PFFDGGEPGS GSSSMASNIE  120
NQAASNDMIT EAEEFLTYKK LGDAVQIPNG KEHTGSCPID KNELSNSVEG QLDSCNQSYS  180
DMIDELLDDV KNLDSLFLQG PPPQPHQLPQ PHPPIYEQLG NVSHSTNVSN DESRKRNYPF  240
GDNDPSLTKK KKNTSADDDD ELGSKTASNS ENQAVAKGMA TEAEENQASK ELGNVSNGNH  300
DEAEPRSHML TEEEEIQAFQ ELRKLLDDHE PENLDPLFPQ PPPPQPHQLP QPPPPQNYHP  360
STLQSPIYEQ LGNVSHSTNV SNDESHKRNC PFGDTGPSRT KKNNISTDDD DELGSNTASN  420
SENQAAHGIP EEYSQPEANL GLVLWDQPHA LLSIYGGPRD LFQNNIFIEL DDLPSSFGDI  480
GSFLAKFSDI IDRSSGVSRD RNTEVAHGSV KDYSALPIGA TLQCK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	252	RKRNYPFGDNDPSLTKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	4e-08	NAC family protein