PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G20425
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 444aa    MW: 49771 Da    PI: 4.6511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G20425genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.52.2e-3981502128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.............kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                  p+GfrF P+ eel++eyL+kk +g++  ++++vi+e+d++k+eP+ +p+                  + ++w+fFs+rd ky++g+r+nr+t++g+Wk
  Ro07_G20425   8 PKGFRFLPSGEELLCEYLEKKNQGSTdSQITDVIPEIDVCKHEPRAIPAlvfkmavflavflD--YySYTQWHFFSPRDYKYSNGTRSNRTTQQGFWK 103
                  89*********************9997778899***************667877777766542..13678**************************** PP

          NAM  85 atgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   tgkd++++++ ++ ++g k+tL+fy   + ++k++ktdWv+hey l
  Ro07_G20425 104 ITGKDRAIKARgSNVEIGRKRTLTFYlhGNGEQKAKKTDWVIHEYYL 150
                  **********955667**********8534677889*********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MSSRRTIPKG FRFLPSGEEL LCEYLEKKNQ GSTDSQITDV IPEIDVCKHE PRAIPALVFK  60
MAVFLAVFLD YYSYTQWHFF SPRDYKYSNG TRSNRTTQQG FWKITGKDRA IKARGSNVEI  120
GRKRTLTFYL HGNGEQKAKK TDWVIHEYYL TAKGEQIGDF VLCCLKNKSD KFDHDKDAPF  180
FDGGEPGMIT EEEELLAYEE LGDAVQIPNG NEDALINGLQ TNCVEGQLDS CNQSDSDMIY  240
ELLDDLENLD SLFLQHPPPP QPHQLPQSHP PQNYHPSTLQ SPIYEQLGNV SHSTNVNNDE  300
SRKRNYPLGD NDPSLTKKKK NNISTDDDDE LGRNTASTSE NQAAHGIPEG YSQPGEDLGL  360
VWWDLPQAAL SINGGPRDSF QNNNYIELDD LPSSFQDIGS FLAKFSDTII DRGSGVSGDR  420
NTELAHGSVK DYSALPIGAT LQCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302320RKRNYPLGDNDPSLTKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-31NAC family protein