PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G20419

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 826aa MW: 90451.6 Da PI: 6.2968

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G20419	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.1e-16	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Ro07_G20419 76 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 120 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MSLPASVRYW PCFLLSLRLV ADPKILLVEN MYQKCKFELL SFEFNYREDC PVMDTFSSGE 60 DLIIKARKPY TITKQRERWT EEEHNRFLEA LKLYGRAWQR IEEHIGTKTA VQIRSHAQKF 120 FSKLEKEAVS KGVPVGQSID IDIPPPRPKR KPSNPYPRKS GVAAPTWSTS HVGEKDGKLV 180 SSASSHSKLA VDLEIEELDE RPSGEEKQNY GKENKEDNCS EVFTLLSESH CSSMSSANQS 240 SITAQAALRN ACTFREFVPS VKKVMTRDVT NESFVTVELN GNQNLKKTDA KKIVQDNATS 300 EASKSENTNA FKLVQGVKAD DLNCALPTDG MQSTPNFPRN VPIHILDGSI GECNQTTTPD 360 LSLSFQDSVF RPMGKSHGQP NLLANQAAST TTEHESNVSR TCIHQSFPAI PPAFAPFHHN 420 LEDYRSSLHI SSTFSSLIVS SLLQNPAAHA AASFAATFWP YTNTENTEDS PACSAGGFPP 480 GQMSSPPNMA AIAGATVAAA TAWWAAHGLL PLCVPLQTSF SCPVPRTGVS SMDKGQAPAT 540 ETEKGENSLQ VPSLQDQKQD PERSEAVQGQ HSPSKSPTTS SSDSDNGGVK LDNGSKADDN 600 EKDVASTEVQ DSDKAKSKKQ VDRSSCGSNT TSSSEVETDA LEKQEKGKEE LKEPDTNHPA 660 SDSSFRRTRS AINMSDSWKE RHMNDSWKEV SEEGRMAFQA LFSREVLPQS FSPPPDLMDK 720 GHQDTKGHQN GGEKDGSALK LDLNSKAWAP FCHPEVEKIA SPVGLNDAEG LLTLGLGYGK 780 QKACRTGFKP YKRCSVEANE NRVANASSHC EEKGPKRLRL EGETSS

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MSLPASVRYW PCFLLSLRLV ADPKILLVEN MYQKCKFELL SFEFNYREDC PVMDTFSSGE  60
DLIIKARKPY TITKQRERWT EEEHNRFLEA LKLYGRAWQR IEEHIGTKTA VQIRSHAQKF  120
FSKLEKEAVS KGVPVGQSID IDIPPPRPKR KPSNPYPRKS GVAAPTWSTS HVGEKDGKLV  180
SSASSHSKLA VDLEIEELDE RPSGEEKQNY GKENKEDNCS EVFTLLSESH CSSMSSANQS  240
SITAQAALRN ACTFREFVPS VKKVMTRDVT NESFVTVELN GNQNLKKTDA KKIVQDNATS  300
EASKSENTNA FKLVQGVKAD DLNCALPTDG MQSTPNFPRN VPIHILDGSI GECNQTTTPD  360
LSLSFQDSVF RPMGKSHGQP NLLANQAAST TTEHESNVSR TCIHQSFPAI PPAFAPFHHN  420
LEDYRSSLHI SSTFSSLIVS SLLQNPAAHA AASFAATFWP YTNTENTEDS PACSAGGFPP  480
GQMSSPPNMA AIAGATVAAA TAWWAAHGLL PLCVPLQTSF SCPVPRTGVS SMDKGQAPAT  540
ETEKGENSLQ VPSLQDQKQD PERSEAVQGQ HSPSKSPTTS SSDSDNGGVK LDNGSKADDN  600
EKDVASTEVQ DSDKAKSKKQ VDRSSCGSNT TSSSEVETDA LEKQEKGKEE LKEPDTNHPA  660
SDSSFRRTRS AINMSDSWKE RHMNDSWKEV SEEGRMAFQA LFSREVLPQS FSPPPDLMDK  720
GHQDTKGHQN GGEKDGSALK LDLNSKAWAP FCHPEVEKIA SPVGLNDAEG LLTLGLGYGK  780
QKACRTGFKP YKRCSVEANE NRVANASSHC EEKGPKRLRL EGETSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	1e-47	MYB_related family protein