PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18694
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 353aa    MW: 38942.1 Da    PI: 5.2825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18694genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.6e-28132193159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK++ g+++pr+YYrCt++   gCp++k+v++s+ dp+++ +tY+g H+++
  Ro07_G18694 132 LDDGYSWRKYGQKDILGANHPRGYYRCTHRntaGCPATKQVQKSDADPTILMVTYTGLHTCH 193
                  59***************************98999**************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MEKRKSTMGN WDQKALTSEL TQGKEVAEQL KNHLHHSSSS QEEREFLISK LLSSYEKALS  60
VLTRDGGSEG ESKQIQGSML DSPCSFGNSS SPLSEISDQD CKNKNVFKKR KTMPKRTEQV  120
KVCSGTGQDG SLDDGYSWRK YGQKDILGAN HPRGYYRCTH RNTAGCPATK QVQKSDADPT  180
ILMVTYTGLH TCHLVSQSKG KQNVSLKQEA GTPRPSPEKS FSFGLRVKTE DLDTREEGNE  240
IFRPFSFPST PIESENNAVG DLVFSAMEND LMGCSYAPTF GSPTTFESDY FAAVSPCHFG  300
LVGNDVQTSE SDLTHEIISA PTSVTNSPIG DFGFSLEDLD VYQFENNPEC TFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-48WRKY family protein