PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G18657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 760aa MW: 82628.6 Da PI: 6.0407 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.3e-07 | 304 | 324 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Ro07_G18657 304 PCPEFRK-GACRRGDMCEYAHG 324 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence |
MCGGPDCSKT TSSETIETNS NPEEMNHLTV TTEDSFSSAL ELAADNDVEG FKQLIDQDAS 60 SINQTGLWYS RQKGSKHIVS EQRTPLMVAA TYGSVDVVKL IVSHPEADVN FSCGLDHSTA 120 LHCAAAGGSF NAIDIVKLLL SAGANLSCVD ASRHRPIDVI VVHPKLQSMR VVLEELLSKT 180 ASDGPVSECS LHLSVSTSNS DSLALSSSSE NGLQSPSESV SSPASKFTDL LVSSAPEKKE 240 YPYDPSLPDI KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY 300 SCVPCPEFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV CFFAHMAEEL 360 RPLYVSTGSA VPSPRSSASG PSVMDMAAAL SLLPGSPSSV SAISPSPFSQ SMSPSANGIS 420 QSSVAWPHPN VPTLHLPGSN LQSSRLRSSL CARDIAPENL NLLRELDAQQ QLLNELNCFS 480 QPRPSSVSVG RSGRSKTLTP SNLEELFSAE FSSSPRYSDH TAASVFSPTH KSAVLNQFQQ 540 QQSMLSPINT NVMSPKNVDH PLLQAQFGVQ SPGRMSPRSV EPISPMGSRL SAFAQLENSH 600 QQLRSLSSRD LGSNNFSSMV GSPVNSWSKW GSPNGKLDWS VNGDAEGRLR RSSSFELGNN 660 GEEPDLSWVQ SLVKESPPEM MKDKFAAPVS SAAASGEVLN SNSQIESIDH SVLDAWLEQM 720 QIDQLVQKWC TLEICIVVVG QFAICFYVHA ALILLLVPDE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |