PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18657
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 760aa    MW: 82628.6 Da    PI: 6.0407
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18657genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07304324526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C++Gd C +aHg
  Ro07_G18657 304 PCPEFRK-GACRRGDMCEYAHG 324
                  8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    
MCGGPDCSKT TSSETIETNS NPEEMNHLTV TTEDSFSSAL ELAADNDVEG FKQLIDQDAS  60
SINQTGLWYS RQKGSKHIVS EQRTPLMVAA TYGSVDVVKL IVSHPEADVN FSCGLDHSTA  120
LHCAAAGGSF NAIDIVKLLL SAGANLSCVD ASRHRPIDVI VVHPKLQSMR VVLEELLSKT  180
ASDGPVSECS LHLSVSTSNS DSLALSSSSE NGLQSPSESV SSPASKFTDL LVSSAPEKKE  240
YPYDPSLPDI KNSIYATDEF RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY  300
SCVPCPEFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCNRRV CFFAHMAEEL  360
RPLYVSTGSA VPSPRSSASG PSVMDMAAAL SLLPGSPSSV SAISPSPFSQ SMSPSANGIS  420
QSSVAWPHPN VPTLHLPGSN LQSSRLRSSL CARDIAPENL NLLRELDAQQ QLLNELNCFS  480
QPRPSSVSVG RSGRSKTLTP SNLEELFSAE FSSSPRYSDH TAASVFSPTH KSAVLNQFQQ  540
QQSMLSPINT NVMSPKNVDH PLLQAQFGVQ SPGRMSPRSV EPISPMGSRL SAFAQLENSH  600
QQLRSLSSRD LGSNNFSSMV GSPVNSWSKW GSPNGKLDWS VNGDAEGRLR RSSSFELGNN  660
GEEPDLSWVQ SLVKESPPEM MKDKFAAPVS SAAASGEVLN SNSQIESIDH SVLDAWLEQM  720
QIDQLVQKWC TLEICIVVVG QFAICFYVHA ALILLLVPDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein