PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G18653 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 146aa MW: 16409.5 Da PI: 6.222 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.7 | 2.6e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++lrr+C++dC+++pyfp ++p++fa vh+++Gasnv ++l++lp++ r +a+++l+yeAe+r++dPvyG+vgvi++l++q+++++ ela+++ Ro07_G18653 5 RCAACRYLRRRCPSDCIFSPYFPPNNPQRFASVHRIYGASNVGRMLQQLPPHLRAEAADALYYEAECRVEDPVYGCVGVISRLHEQIHEAECELAKTR 102 6**********************************************************************************************998 PP DUF260 99 ee 100 + Ro07_G18653 103 AD 104 75 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence |
MISGRCAACR YLRRRCPSDC IFSPYFPPNN PQRFASVHRI YGASNVGRML QQLPPHLRAE 60 AADALYYEAE CRVEDPVYGC VGVISRLHEQ IHEAECELAK TRADIMINSD IGQQAQVQHI 120 NGEVEDNLSL LHEQSNVGQT QFGSSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 7e-37 | LBD family protein |