PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18650
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 346aa    MW: 37915.6 Da    PI: 7.5443
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18650genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32170226158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Ro07_G18650 170 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 226
                  69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MMPAKSNDED PHLEPGAQTV LQSTIQPWWR GAGKRSSFGE SASALSLPEH GNGVVMNSAM  60
QSQANAGLDG GANFNKDVQT TVGSQSDGNS GRENQQTKST SSALVAKMGE HRDPNSQMEL  120
VGHSIVLTSY PYSDPQYGGI LTHYGPQAMV PPHFYGLHHG RMPLPLEMEE EPVYVNAKQY  180
HGILRRRQSR AKAELERKLI KVRKPYLHES RHQHALRRAR GCGGRFLNTK KQDDSDANSS  240
SEKTINLDAN FSTKSGFECF PNDSNGNCDS SNVQQEGSGS WFRTLNNHTI SNGNGNGHDP  300
SSAYHTRFGD STEGVFLGQQ RETMQLNGSS RGAIHSVAEG VHYYTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.11e-39NF-YA family protein