PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G18156

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 468aa MW: 52096.9 Da PI: 6.4959

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G18156	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.2e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ Ro07_G18156 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 89**6666.***********5 PP
2	zf-CCCH	22.5	1.9e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ Ro07_G18156 34 ICTFYQK-GACAFGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	19.6	1.7e-06	146	168	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg Ro07_G18156 146 RAICS-FAAAGNCPRGEKCPHIHG 168 78999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MAKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQK GACAFGSRCR YEHVKASRAQ 60 SSGSSSSANS HQALAFDSAP AHPSRTASSG VALVPGTLSE LSAFSSPFLP PPKPAWSDSL 120 DDGDVDQNED DDVGVGETRS ARPADRAICS FAAAGNCPRG EKCPHIHGDI CPSCGKHCLH 180 PYRPVEREEH MRTCEEKHKH LEALKRSQEI ECSVCLERVL SKPTVAERKF GILSECDHPF 240 CISCIRNWRS SSPTSGMDVN SALRACPICR KLSYFVIPSV IWYSTKEEKE EIVDSYKARL 300 RSIDCKHFDF GNGNCPFGTS CFYKEMLSDY LLLNAGLRIM PPPRRPPPRR SDIVQMDALY 360 QMFEHLEELE DYTPGDLDIE GLNPLEMQFL LMQLGFDPNS LQSIQTSKAH PHAYQDGRLE 420 EVVLRHLGNE DGQTVIATNI RLSDFLELLA GGGRGCGRRH DMLGCYEG

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MAKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSANS HQALAFDSAP AHPSRTASSG VALVPGTLSE LSAFSSPFLP PPKPAWSDSL  120
DDGDVDQNED DDVGVGETRS ARPADRAICS FAAAGNCPRG EKCPHIHGDI CPSCGKHCLH  180
PYRPVEREEH MRTCEEKHKH LEALKRSQEI ECSVCLERVL SKPTVAERKF GILSECDHPF  240
CISCIRNWRS SSPTSGMDVN SALRACPICR KLSYFVIPSV IWYSTKEEKE EIVDSYKARL  300
RSIDCKHFDF GNGNCPFGTS CFYKEMLSDY LLLNAGLRIM PPPRRPPPRR SDIVQMDALY  360
QMFEHLEELE DYTPGDLDIE GLNPLEMQFL LMQLGFDPNS LQSIQTSKAH PHAYQDGRLE  420
EVVLRHLGNE DGQTVIATNI RLSDFLELLA GGGRGCGRRH DMLGCYEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-108	C3H family protein