PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18156
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 468aa    MW: 52096.9 Da    PI: 6.4959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18156genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.2e-06326226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k++lC+ffa  G C  G+ C F+H+
  Ro07_G18156  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                 89****6666.*************5 PP

2zf-CCCH22.51.9e-073454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                 +C f+++ G C +G+rC++ H+
  Ro07_G18156 34 ICTFYQK-GACAFGSRCRYEHV 54
                 7******.***********997 PP

3zf-CCCH19.61.7e-06146168326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C+ fa+ G C++G++C+ +Hg
  Ro07_G18156 146 RAICS-FAAAGNCPRGEKCPHIHG 168
                  78999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    
MAKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSANS HQALAFDSAP AHPSRTASSG VALVPGTLSE LSAFSSPFLP PPKPAWSDSL  120
DDGDVDQNED DDVGVGETRS ARPADRAICS FAAAGNCPRG EKCPHIHGDI CPSCGKHCLH  180
PYRPVEREEH MRTCEEKHKH LEALKRSQEI ECSVCLERVL SKPTVAERKF GILSECDHPF  240
CISCIRNWRS SSPTSGMDVN SALRACPICR KLSYFVIPSV IWYSTKEEKE EIVDSYKARL  300
RSIDCKHFDF GNGNCPFGTS CFYKEMLSDY LLLNAGLRIM PPPRRPPPRR SDIVQMDALY  360
QMFEHLEELE DYTPGDLDIE GLNPLEMQFL LMQLGFDPNS LQSIQTSKAH PHAYQDGRLE  420
EVVLRHLGNE DGQTVIATNI RLSDFLELLA GGGRGCGRRH DMLGCYEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-108C3H family protein