PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G17394

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 406aa MW: 46257.3 Da PI: 5.5725

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G17394	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	260	282	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Ro07_G17394 260 YKCETCKKVFKSYQALGGHRASH 282 9************9999998887 PP
2	zf-C2H2	11.2	0.0011	319	341	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++Fs+ L H r+H Ro07_G17394 319 HECPVCFRVFSSGQALGGHKRSH 341 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MERHKCKLCM RNFSNGRALG GHMRSHMMNL PIHPKPEVEE EEEEEAPHDQ VLIDEIDSAS 60 AASSSSEEEQ QGEEEEEDEE GMYYGLRENP KRSIRLVDPE FSFAVDAGSV VLQDRESETE 120 SSKNPTRRRS KRTRKSAMLD HHHHHQHQLL NQYHDHAMLN QHHQEALKKI KLKNKIDSWA 180 YNVEPEPVSS ISDATTEEDV AFCLMMLSRD KWKKQDKQQQ EEQDDQDEDV EAEYRSLDDS 240 DESEEQLIKF QRPKSSRGKY KCETCKKVFK SYQALGGHRA SHKKIKAASN PNPNRIVYEP 300 EPDPEINNNA GTSSFVKTHE CPVCFRVFSS GQALGGHKRS HVTGSAAINN TPPVKSLAKL 360 GDNMIDLNLP APVDDDEMSQ IELSAVSDAE FVWTVVCGKE KPKRNI

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MERHKCKLCM RNFSNGRALG GHMRSHMMNL PIHPKPEVEE EEEEEAPHDQ VLIDEIDSAS  60
AASSSSEEEQ QGEEEEEDEE GMYYGLRENP KRSIRLVDPE FSFAVDAGSV VLQDRESETE  120
SSKNPTRRRS KRTRKSAMLD HHHHHQHQLL NQYHDHAMLN QHHQEALKKI KLKNKIDSWA  180
YNVEPEPVSS ISDATTEEDV AFCLMMLSRD KWKKQDKQQQ EEQDDQDEDV EAEYRSLDDS  240
DESEEQLIKF QRPKSSRGKY KCETCKKVFK SYQALGGHRA SHKKIKAASN PNPNRIVYEP  300
EPDPEINNNA GTSSFVKTHE CPVCFRVFSS GQALGGHKRS HVTGSAAINN TPPVKSLAKL  360
GDNMIDLNLP APVDDDEMSQ IELSAVSDAE FVWTVVCGKE KPKRNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	171	KRTRKSAMLDHHHHHQHQLLNQYHDHAMLNQHHQEALKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	7e-46	C2H2 family protein