PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G17080

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 1467aa MW: 165923 Da PI: 6.0039

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G17080	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	28	4.4e-09	1244	1300	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 dDg++W + +++ ++s Y Ct++ +C++k ++ s +dp++++itY g+H++ Ro07_G17080 1244 DDGFSWNLNRSSRI-DNQGTKSEYTCTHRpSCEAKSELRISIDDPTILDITYIGRHTC 1300 78888876555555.678999*****99************************98 PP
2	WRKY	52	1.4e-16	1323	1383	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W KY q ++ g ++p YY Ct + gC++ k+v+ ++ed+++++itY+g+H+++ Ro07_G17080 1323 SDGFSWGKYCQMDMLGDKYPSVYYVCTPQnvrGCMAIKEVQYANEDQTILKITYRGRHTCT 1383 7************************988889************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1467 aa Download sequence
MHLCGYNKKK SSSLPIYLVA FSSILGLVLI SLMASSSSSS SSSSSERRCK YDVFLNFRGE 60 DTRKIFVGHL HKALEQRGLN IFIDSEDVGK GNDLSDLLKA ISDSKLSIVV LSQNYASSTW 120 CLKELVQIMK CNATQKQIVV PIFYQLDPSH VRKQEASFAQ AFTEHESNKD LQEVQSWRSA 180 LTQATNFSGW DSRDYKDDAK LIDAIAVDVF NKLIHIPSSE VNDDLVGMDS HMHNMRRLLS 240 LSGGTSDVVY VGIWGMGGIG KTTIAKAVYN NIAHLFEHRC FLDNVRERFT GKDTVQMQEE 300 FLSAILNEKV KSLDGGYMMM MKRLADRKIL VVLDDVDDSN QIHTLLGKKR SFGGGSKIIV 360 TTRDEHPVCL QNKQPSDEYD HQSRRALEYA QGLPLALQIL GSHLHNRSIS MWKDELEKIK 420 KIPNSGIQRV LRTSYDGLDD SQKKIFLDIA CFFKGLHRDY VTQVLGSFDD FYPLSGLEVL 480 LEKALVTISK FGGLEMHDLL QEMGREIVHN ESPKKPWKRS RLWSYQDFQD VLTQNTATKV 540 EGIMIELSNS EDIYLNAEGF VSMTNLRLLR ITYPLIVNQF DNPIFRDIFE EESWLDMIYF 600 NQPNNCKLHL NGNPKFLSHK LRVLAWHGCP LKSLPSNFDP KNLVDLDMRF SHIEQLWVGT 660 KRIKELISIN LSYCYYLKEI PLCTEATKLE NLILYGCISL LEVHPSISAL ENLVFLSLED 720 CTTLKILPSS IHRLKSLKFL DLCGCSNLEM FPEILEDMDA LSKLKLDGTA IKELPSSIER 780 LRRLESLSMK YCKSLVCLPD SICNLADLTY LYLSGCSKLP NLPENLGSLE SLLELELDFS 840 GIEQLPVSIL RLKLRRLSFN HCKQMKALLS SWRSSSIEGR CTALVYIDLS DRNLLELSDA 900 IVHFSSLKIL KLLRTNLESL PAIMNRLVFL ERLELEGCKI LKSIPELSSS ISYINANNCA 960 ALETVSTPKR PYDIGRCFTF SYCSRLVQND IFRDIVETHS PPQGNYSRPF YICFPGSEIP 1020 ERFIHQCKGS SVTAQLPPNW VDKKFLGFTI CAVTNNPQGV YFISSAQCFC TFKGNNCEYR 1080 FSCYLSDGYF HLDETYDPWS TRLVPNHMFL GYLPWSEFGI NGEEVNERCY TEAKFEIQLT 1140 GPIFGPCIES CGVQFFFANN ESSPEGRSAE PSGSDVSDIS DEEQYLKLSE LFGGANKFFR 1200 EYDYMSDESD CEIEDNDSSG KRKILSRWTQ QVRVTSGLMQ GDLDDGFSWN LNRSSRIDNQ 1260 GTKSEYTCTH RPSCEAKSEL RISIDDPTIL DITYIGRHTC WKTLPMLTHQ VRLTPGMGLE 1320 GPSDGFSWGK YCQMDMLGDK YPSVYYVCTP QNVRGCMAIK EVQYANEDQT ILKITYRGRH 1380 TCTQASTISI GGRGDSRISV GGDALRTHDQ VVQSPTSLGA NGGGGNVIRL VDKAADDGNV 1440 NMLPDTNSQD TEHFQNVNDM ENNDLAV

Sequence ? help Back to Top

Protein Sequence Length: 1467 aa Download sequence

MHLCGYNKKK SSSLPIYLVA FSSILGLVLI SLMASSSSSS SSSSSERRCK YDVFLNFRGE  60
DTRKIFVGHL HKALEQRGLN IFIDSEDVGK GNDLSDLLKA ISDSKLSIVV LSQNYASSTW  120
CLKELVQIMK CNATQKQIVV PIFYQLDPSH VRKQEASFAQ AFTEHESNKD LQEVQSWRSA  180
LTQATNFSGW DSRDYKDDAK LIDAIAVDVF NKLIHIPSSE VNDDLVGMDS HMHNMRRLLS  240
LSGGTSDVVY VGIWGMGGIG KTTIAKAVYN NIAHLFEHRC FLDNVRERFT GKDTVQMQEE  300
FLSAILNEKV KSLDGGYMMM MKRLADRKIL VVLDDVDDSN QIHTLLGKKR SFGGGSKIIV  360
TTRDEHPVCL QNKQPSDEYD HQSRRALEYA QGLPLALQIL GSHLHNRSIS MWKDELEKIK  420
KIPNSGIQRV LRTSYDGLDD SQKKIFLDIA CFFKGLHRDY VTQVLGSFDD FYPLSGLEVL  480
LEKALVTISK FGGLEMHDLL QEMGREIVHN ESPKKPWKRS RLWSYQDFQD VLTQNTATKV  540
EGIMIELSNS EDIYLNAEGF VSMTNLRLLR ITYPLIVNQF DNPIFRDIFE EESWLDMIYF  600
NQPNNCKLHL NGNPKFLSHK LRVLAWHGCP LKSLPSNFDP KNLVDLDMRF SHIEQLWVGT  660
KRIKELISIN LSYCYYLKEI PLCTEATKLE NLILYGCISL LEVHPSISAL ENLVFLSLED  720
CTTLKILPSS IHRLKSLKFL DLCGCSNLEM FPEILEDMDA LSKLKLDGTA IKELPSSIER  780
LRRLESLSMK YCKSLVCLPD SICNLADLTY LYLSGCSKLP NLPENLGSLE SLLELELDFS  840
GIEQLPVSIL RLKLRRLSFN HCKQMKALLS SWRSSSIEGR CTALVYIDLS DRNLLELSDA  900
IVHFSSLKIL KLLRTNLESL PAIMNRLVFL ERLELEGCKI LKSIPELSSS ISYINANNCA  960
ALETVSTPKR PYDIGRCFTF SYCSRLVQND IFRDIVETHS PPQGNYSRPF YICFPGSEIP  1020
ERFIHQCKGS SVTAQLPPNW VDKKFLGFTI CAVTNNPQGV YFISSAQCFC TFKGNNCEYR  1080
FSCYLSDGYF HLDETYDPWS TRLVPNHMFL GYLPWSEFGI NGEEVNERCY TEAKFEIQLT  1140
GPIFGPCIES CGVQFFFANN ESSPEGRSAE PSGSDVSDIS DEEQYLKLSE LFGGANKFFR  1200
EYDYMSDESD CEIEDNDSSG KRKILSRWTQ QVRVTSGLMQ GDLDDGFSWN LNRSSRIDNQ  1260
GTKSEYTCTH RPSCEAKSEL RISIDDPTIL DITYIGRHTC WKTLPMLTHQ VRLTPGMGLE  1320
GPSDGFSWGK YCQMDMLGDK YPSVYYVCTP QNVRGCMAIK EVQYANEDQT ILKITYRGRH  1380
TCTQASTISI GGRGDSRISV GGDALRTHDQ VVQSPTSLGA NGGGGNVIRL VDKAADDGNV  1440
NMLPDTNSQD TEHFQNVNDM ENNDLAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	5e-90	WRKY family protein