PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G17020

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 591aa MW: 64978.4 Da PI: 5.5745

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G17020	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	6e-52	24	151	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv +yLk+kv +k++++ ++i++vdiyk+ePwdL k ++k++++e+yfFs dkky +g r nrat+ gyWkatg+d++v++ + Ro07_G17020 24 LAPGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISDVDIYKSEPWDLAcKsSLKSRDQEYYFFSALDKKYGNGARMNRATNLGYWKATGNDRPVKH-N 119 579************************9.89**********85347788999**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLvf++grap+g++t+Wvmheyrl Ro07_G17020 120 NKTVGMKKTLVFHSGRAPDGKRTNWVMHEYRL 151 99**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
MGHELVPSTT TPPVPKPPVA PTALAPGFRF HPTDEELVIY YLKRKVCRKP FKFNAISDVD 60 IYKSEPWDLA CKSSLKSRDQ EYYFFSALDK KYGNGARMNR ATNLGYWKAT GNDRPVKHNN 120 KTVGMKKTLV FHSGRAPDGK RTNWVMHEYR LVDTEMEKPG NGVPQDAYVL CRVFHKSNIG 180 PPNGHRYAPF VEEEWDDDKL TFVPGEQTRD EPVAVRDSVV GGNCRDVVIV ENGHDSVVGG 240 TIPDAIVVAN GCHALVVANG HDAVVANGRD AAVGGNGHAA ACIEQSDHAT VSIEQKDNVA 300 AGIEQKDDAA TCIEQKDHAA FLGGNGHGTS VDGQGQDTMM DVDGHRTTEE GNVHGSIEGN 360 GHDGRSAGNY FVQDTQTISN ALLSATELPR EDPNVLLPCK TERMDDYPMT CVVNREERLD 420 DYPSPLADDP QPLLSLFNQQ PGILRQYKRR RHNESNSNRS NASEISSGLT HDPCSSTTTT 480 ASTEASVTAT TKRNFLSALV EFQLLESLEP KDKTPVAPPE FNAALHNSSV PPSCLKFIES 540 LQNEIHKISI EKETLKFEML SAQAVINILQ SRIDLLNKEN EDLKRNAQEA E

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

MGHELVPSTT TPPVPKPPVA PTALAPGFRF HPTDEELVIY YLKRKVCRKP FKFNAISDVD  60
IYKSEPWDLA CKSSLKSRDQ EYYFFSALDK KYGNGARMNR ATNLGYWKAT GNDRPVKHNN  120
KTVGMKKTLV FHSGRAPDGK RTNWVMHEYR LVDTEMEKPG NGVPQDAYVL CRVFHKSNIG  180
PPNGHRYAPF VEEEWDDDKL TFVPGEQTRD EPVAVRDSVV GGNCRDVVIV ENGHDSVVGG  240
TIPDAIVVAN GCHALVVANG HDAVVANGRD AAVGGNGHAA ACIEQSDHAT VSIEQKDNVA  300
AGIEQKDDAA TCIEQKDHAA FLGGNGHGTS VDGQGQDTMM DVDGHRTTEE GNVHGSIEGN  360
GHDGRSAGNY FVQDTQTISN ALLSATELPR EDPNVLLPCK TERMDDYPMT CVVNREERLD  420
DYPSPLADDP QPLLSLFNQQ PGILRQYKRR RHNESNSNRS NASEISSGLT HDPCSSTTTT  480
ASTEASVTAT TKRNFLSALV EFQLLESLEP KDKTPVAPPE FNAALHNSSV PPSCLKFIES  540
LQNEIHKISI EKETLKFEML SAQAVINILQ SRIDLLNKEN EDLKRNAQEA E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	1e-96	NAC family protein