PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G16754

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 362aa MW: 40340.7 Da PI: 9.4391

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G16754	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.3	6.3e-21	52	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +re++ +lrrg+lk+++W++v++++ + ++++qC++k+e+l+kry+ + +++k+ s+ +s++++f++++a Ro07_G16754 52 CWSHDETVALIDSYREKWYSLRRGNLKATHWQDVADAVarrcPAAIPAKTAVQCRHKMEKLRKRYRTEIQRAKSMpLSRFTSSWVHFKRMDA 143 8******************************9999965545555689*********************977999********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MASSPPSSPQ EDSPTPLQTE PPQAVPLALP APQIQQTPTP APPSSRRLPP PCWSHDETVA 60 LIDSYREKWY SLRRGNLKAT HWQDVADAVA RRCPAAIPAK TAVQCRHKME KLRKRYRTEI 120 QRAKSMPLSR FTSSWVHFKR MDAMEKGPAA MKNENSDSPG EDGEDDENEE EDDQDQELYE 180 ELRYGSNMKS MSKMYRNGVG VGGSGGSSVG GGSGGFRIRI PTGVSIAQPG NKVYPKMDPK 240 FGLNSHPGSH SGQSYATAKV MRECSNNSGG RPGGLGKRER ERERERDPVA EMVSAIKVLG 300 DGFVRMEQMK MEMAREIETM RMEMEMKRTE MILESQQRIV EAFAKAVSEK KKKAKRMPSP 360 EA

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MASSPPSSPQ EDSPTPLQTE PPQAVPLALP APQIQQTPTP APPSSRRLPP PCWSHDETVA  60
LIDSYREKWY SLRRGNLKAT HWQDVADAVA RRCPAAIPAK TAVQCRHKME KLRKRYRTEI  120
QRAKSMPLSR FTSSWVHFKR MDAMEKGPAA MKNENSDSPG EDGEDDENEE EDDQDQELYE  180
ELRYGSNMKS MSKMYRNGVG VGGSGGSSVG GGSGGFRIRI PTGVSIAQPG NKVYPKMDPK  240
FGLNSHPGSH SGQSYATAKV MRECSNNSGG RPGGLGKRER ERERERDPVA EMVSAIKVLG  300
DGFVRMEQMK MEMAREIETM RMEMEMKRTE MILESQQRIV EAFAKAVSEK KKKAKRMPSP  360
EA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-60	Trihelix family protein