PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G16596

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 375aa MW: 41018.4 Da PI: 7.3998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G16596	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Ro07_G16596 157 YECKTCNRTFPSFQALGGHRASH 179 99**********99999998887 PP
2	zf-C2H2	12.9	0.00032	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Ro07_G16596 248 HECSICGAEFTSGQALGGHMRRH 270 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEEALADHQH HDHQEEEVII GCKEQHSISN NIIIKGKRTK RLRPQSPIPF AIHTNSSTAD 60 GGGGGECNNT TNSSPTTSAE LQDSTEEEED MANCLILLAQ GQSRSPFSSN RLLHQSPNDH 120 NTTMTSRRFL EAAPISAAMG PAKVAGAGAA TGGYYVYECK TCNRTFPSFQ ALGGHRASHK 180 KPKAAINVDD KKHFGIGLLP SDEEDTQLFK NMNINTPNTN TSSSSPLTLH LSNRGLVLST 240 NNNKSKVHEC SICGAEFTSG QALGGHMRRH RAPVGGPAAN TTLSLTAPPP TVPLALEAQQ 300 PQHHHHHNQQ QPIKKQRSML SLDLDLNLPA PEDDHHHRDQ SKFVFASKQQ QQQQPQQPQQ 360 QQQQESGRNV VNTWS

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEEALADHQH HDHQEEEVII GCKEQHSISN NIIIKGKRTK RLRPQSPIPF AIHTNSSTAD  60
GGGGGECNNT TNSSPTTSAE LQDSTEEEED MANCLILLAQ GQSRSPFSSN RLLHQSPNDH  120
NTTMTSRRFL EAAPISAAMG PAKVAGAGAA TGGYYVYECK TCNRTFPSFQ ALGGHRASHK  180
KPKAAINVDD KKHFGIGLLP SDEEDTQLFK NMNINTPNTN TSSSSPLTLH LSNRGLVLST  240
NNNKSKVHEC SICGAEFTSG QALGGHMRRH RAPVGGPAAN TTLSLTAPPP TVPLALEAQQ  300
PQHHHHHNQQ QPIKKQRSML SLDLDLNLPA PEDDHHHRDQ SKFVFASKQQ QQQQPQQPQQ  360
QQQQESGRNV VNTWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-56	C2H2 family protein