PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G16487

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 1622aa MW: 179595 Da PI: 6.4035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G16487	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	1593	1619	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Ro07_G16487 1593 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1619 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1622 aa Download sequence
MGDVKIPNWL EGLPLAPEFH PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK RPELGSDVSS ENDCAPTKLG PGDGSNDGEV RAVFTTRHQE LGQTVKRAKV 120 ADLNPPSGVD KQVWQSGEVY TLEQFESKSR AFARSILGTI RDVSPLVIEA MFWKAASEKP 180 IYVEYANDVP GSAFEEPEGQ LCYSHRRRRK RNSYQRSGAN SDSKNSETIN SCERNSQNGE 240 VKDDSPKIVS DTCLEVSKSS ASPGIVSTDE TSQSSRKKNQ NSSCDMEGTA GWKLSNSPWN 300 LQVIARSPGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHNGSSKTWY 360 SVPGDYAFSF EELIRTEAYG GNADRLAALS LLGNKTTLMS PEVVIASGIP CCRLIQNPGE 420 FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LKVAKEAAVR RAAMNYLPML SHQQLLYLST 480 MSFVSRVPRS LLPGVRSSRM RDRQKEDREL SVKKAFIEDI LNENDVLSAL LGKESSYRAV 540 LWNPDLLPCA SKESPIPTAS APVDTNSKEN ATDTQRGNST NDQNFLVDEM SLYMENLNDL 600 YLGSDDLSSD FQVDSGTLAC VACGILGFPF MSVVQPSEKA SMELQPEYFS AEEFPGVSGL 660 KNSHFSPEHR ESFKGCATED LPPISNAFPP AKDPLIPCTM KFNKGWNTVD KFLRPRSFCL 720 EHAVETLELL QHKGGANMLV ICHSDYQKIK APAAAIAEEI GCPFNYNEVP LDIASKEDLN 780 LIDLAVDDGR DECGEDWTSK LGINLRYCVK VRKSSSSKRV QHALALGGVF SKQSSSSEFL 840 TVKWTSRRSR TKKVYLDAPY KQCESIEKKK EVVEGRSADA TSFKREGKII QYSRRNKLKP 900 STSTVAGTVV EHPATSKERD KHSRRASGSI IYNNGKSSGS SIYNNGKSTS ICARLDSFAS 960 NSMSEMRPVV QMREATRDIC LDSTLSQVAD TLALTAGSAD AQIENHSLEE RNMNSGGCNL 1020 AARESDMQEE IKIPEEAREN KSITPLVIAR DARFEKHRDK QKTENLNKNC GNCNLVSEGQ 1080 SQLLAEEDVL TNGVSVFTKS TNLCAANSIV TNSEEQMVNA VIEKSCVNSE VCESMTLDAE 1140 VQQEIQTTDS SNDKAPVSCS STLLNDPTFT AAEGYVECLR GTHIAEAFSN VVSSEFKTEE 1200 DIKIPKGRNE EPSLSYTGRI SQLSPASTDG SSGVPRELCA AADFQPGPIS IGEEFQAADR 1260 SSEGEYISTS MIRMEETHPS FSLEESSVVR GSSLEESTSN GVTSATVVQQ DAQTPNEAME 1320 APSYNFVVRG ENQPIPVSVE DEIPRVTCAT DATLDDKERG TISYSNKELI ASHDTSKCEP 1380 SRVTIKTYFR VKRGTRAAQE LLNGSEVCIS QRDRELENIE SSIVDPRPSP QIESRRKRGV 1440 EQKMEDNFNF NGFIRGPCEG LRPRAGNDAT ISGIDIHNQD EEKQAAKKVK RPDVPVPPKD 1500 KKKEQARKSH SCNLGSCRMS FQTKEELMVH KRNRCPHEGC GKKFSCHKYA VVHSRVHEND 1560 RPFKCPWKGC SMSFKWAWAQ TEHIRVHTGE KPYKCKVDGC GLSFRFVSDF SRHRRKTGHY 1620 VS

Sequence ? help Back to Top

Protein Sequence Length: 1622 aa Download sequence

MGDVKIPNWL EGLPLAPEFH PTHTEFADPI AYISKIEKEA SEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK RPELGSDVSS ENDCAPTKLG PGDGSNDGEV RAVFTTRHQE LGQTVKRAKV  120
ADLNPPSGVD KQVWQSGEVY TLEQFESKSR AFARSILGTI RDVSPLVIEA MFWKAASEKP  180
IYVEYANDVP GSAFEEPEGQ LCYSHRRRRK RNSYQRSGAN SDSKNSETIN SCERNSQNGE  240
VKDDSPKIVS DTCLEVSKSS ASPGIVSTDE TSQSSRKKNQ NSSCDMEGTA GWKLSNSPWN  300
LQVIARSPGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHNGSSKTWY  360
SVPGDYAFSF EELIRTEAYG GNADRLAALS LLGNKTTLMS PEVVIASGIP CCRLIQNPGE  420
FVVTFPRAYH VGFSHGFNCG EAANFGTPQW LKVAKEAAVR RAAMNYLPML SHQQLLYLST  480
MSFVSRVPRS LLPGVRSSRM RDRQKEDREL SVKKAFIEDI LNENDVLSAL LGKESSYRAV  540
LWNPDLLPCA SKESPIPTAS APVDTNSKEN ATDTQRGNST NDQNFLVDEM SLYMENLNDL  600
YLGSDDLSSD FQVDSGTLAC VACGILGFPF MSVVQPSEKA SMELQPEYFS AEEFPGVSGL  660
KNSHFSPEHR ESFKGCATED LPPISNAFPP AKDPLIPCTM KFNKGWNTVD KFLRPRSFCL  720
EHAVETLELL QHKGGANMLV ICHSDYQKIK APAAAIAEEI GCPFNYNEVP LDIASKEDLN  780
LIDLAVDDGR DECGEDWTSK LGINLRYCVK VRKSSSSKRV QHALALGGVF SKQSSSSEFL  840
TVKWTSRRSR TKKVYLDAPY KQCESIEKKK EVVEGRSADA TSFKREGKII QYSRRNKLKP  900
STSTVAGTVV EHPATSKERD KHSRRASGSI IYNNGKSSGS SIYNNGKSTS ICARLDSFAS  960
NSMSEMRPVV QMREATRDIC LDSTLSQVAD TLALTAGSAD AQIENHSLEE RNMNSGGCNL  1020
AARESDMQEE IKIPEEAREN KSITPLVIAR DARFEKHRDK QKTENLNKNC GNCNLVSEGQ  1080
SQLLAEEDVL TNGVSVFTKS TNLCAANSIV TNSEEQMVNA VIEKSCVNSE VCESMTLDAE  1140
VQQEIQTTDS SNDKAPVSCS STLLNDPTFT AAEGYVECLR GTHIAEAFSN VVSSEFKTEE  1200
DIKIPKGRNE EPSLSYTGRI SQLSPASTDG SSGVPRELCA AADFQPGPIS IGEEFQAADR  1260
SSEGEYISTS MIRMEETHPS FSLEESSVVR GSSLEESTSN GVTSATVVQQ DAQTPNEAME  1320
APSYNFVVRG ENQPIPVSVE DEIPRVTCAT DATLDDKERG TISYSNKELI ASHDTSKCEP  1380
SRVTIKTYFR VKRGTRAAQE LLNGSEVCIS QRDRELENIE SSIVDPRPSP QIESRRKRGV  1440
EQKMEDNFNF NGFIRGPCEG LRPRAGNDAT ISGIDIHNQD EEKQAAKKVK RPDVPVPPKD  1500
KKKEQARKSH SCNLGSCRMS FQTKEELMVH KRNRCPHEGC GKKFSCHKYA VVHSRVHEND  1560
RPFKCPWKGC SMSFKWAWAQ TEHIRVHTGE KPYKCKVDGC GLSFRFVSDF SRHRRKTGHY  1620
VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein