PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G15010

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 760aa MW: 83268.7 Da PI: 4.651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G15010	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3e-09	606	647	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ ++ I ++ gRt+ q+k+++ k Ro07_G15010 606 RWSKQDTELFYEGIEQFGSD-FSMITPLFP-GRTRHQVKLKFKK 647 8*****************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MVVHTRRNHI WSYTYMDDLD FESVPVRVAG RFRPKLKPKS TKVASTAAAS ELPNVITENS 60 IPISSTVSDT VPSAASVDVG EVKLTDPIGL SSVASEVLGI LEPSENNDHL CSSVLSFDRD 120 RTTKPSESSA ADTLQPSVAA SNGSEGSHSV IGKSAGENAD IFSGLECLDD FVTQTTSVAA 180 SSKSPDKVDE GKCGAATQCS VESSAFLACD VAEAQTFSDY CATQDPVSCS EGAISNEHGE 240 TQLETKVDGS FSEFEALDVV SEVPISTGHR SEKLQPKLRV KKGKENPNIP HSEVESTTLS 300 EAANFGTGDM DESSLHAFPP GDVRDPLSPT FGDSIAPNPS PNFQVNADSL EETTQLDEAV 360 FGDAAHSEGV GGRGRKSGNG KASAASNRPQ KCKGSAADEE AKDGTSSRKS RKRLPRYQVD 420 EPGNDTNEDT LNAENTSDFD GNEDREHNTA RRKRAPSKSK IRVSENEKPV QKGKRTKKAP 480 DESTEEPTKK KFSHSTRRNR RHVDKSLLEI PVDEIDPQKL PIKDLIRLQE YRERLAIKEA 540 EKSKTPVSNK SAYDKFQKEA SHDEENFGFE QDGSSDEDQA GYRDRVSTSS SSFNYQSYME 600 KAPIARWSKQ DTELFYEGIE QFGSDFSMIT PLFPGRTRHQ VKLKFKKEDR QNPLRINEAF 660 RRHSKDNSKY VSVINELQKG AKEKQESNAN ESTEMTGQEE VELTHENDGG VTKPESDEIQ 720 DMETDVTAEV QAEEAAEVHS PVKSDECDDG NSFGGWDDEF

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MVVHTRRNHI WSYTYMDDLD FESVPVRVAG RFRPKLKPKS TKVASTAAAS ELPNVITENS  60
IPISSTVSDT VPSAASVDVG EVKLTDPIGL SSVASEVLGI LEPSENNDHL CSSVLSFDRD  120
RTTKPSESSA ADTLQPSVAA SNGSEGSHSV IGKSAGENAD IFSGLECLDD FVTQTTSVAA  180
SSKSPDKVDE GKCGAATQCS VESSAFLACD VAEAQTFSDY CATQDPVSCS EGAISNEHGE  240
TQLETKVDGS FSEFEALDVV SEVPISTGHR SEKLQPKLRV KKGKENPNIP HSEVESTTLS  300
EAANFGTGDM DESSLHAFPP GDVRDPLSPT FGDSIAPNPS PNFQVNADSL EETTQLDEAV  360
FGDAAHSEGV GGRGRKSGNG KASAASNRPQ KCKGSAADEE AKDGTSSRKS RKRLPRYQVD  420
EPGNDTNEDT LNAENTSDFD GNEDREHNTA RRKRAPSKSK IRVSENEKPV QKGKRTKKAP  480
DESTEEPTKK KFSHSTRRNR RHVDKSLLEI PVDEIDPQKL PIKDLIRLQE YRERLAIKEA  540
EKSKTPVSNK SAYDKFQKEA SHDEENFGFE QDGSSDEDQA GYRDRVSTSS SSFNYQSYME  600
KAPIARWSKQ DTELFYEGIE QFGSDFSMIT PLFPGRTRHQ VKLKFKKEDR QNPLRINEAF  660
RRHSKDNSKY VSVINELQKG AKEKQESNAN ESTEMTGQEE VELTHENDGG VTKPESDEIQ  720
DMETDVTAEV QAEEAAEVHS PVKSDECDDG NSFGGWDDEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-44	MYB_related family protein