PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G13993
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 649aa    MW: 70836.2 Da    PI: 6.6528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G13993genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.39.9e-1062796492374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++ L+e+A a+s+g+ e+a ++L+rl + ++p  ++ qRl  +++ AL++r++     + +  p+ e     ++e++ ++++++evs ++++++++aN
  Ro07_G13993 279 KQSLMEAASAISEGKSEAAAEILTRLTQVSNPIPNSEQRLLEFMALALKSRVNP----VDNPPPVAEL---FTQEHAGSTQFLYEVSQCFRLGFMAAN 369
                  578**************************************************9....4433333333...4899999******************** PP

         GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +aIlea+  +     +++H+iDfdi+qG+Q++ Ll+aL++ ++g+p  ++iT+v +  +g +e+l++++++L+++A+e+gv +efnv v+++l++l+ 
  Ro07_G13993 370 HAILEATLAAdqsttNKIHVIDFDIGQGGQYVHLLRALSTPQNGKPsVVKITTVPD--NGGEERLRTVRQNLSQIAKEVGVGLEFNV-VSQKLSELNR 464
                  *****986554557799**********************9887776589*****99..77**************************9.8********* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+lsP+vv++veqe+++n+++F++r+ e++ yy al+ds+e++++r++ +r+k E++ 
  Ro07_G13993 465 ESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLSPRVVTLVEQELNTNTAPFMARVNESCAYYGALLDSIESTVARDKPDRVKAEEA- 561
                  *************************************************************************************************. PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll...rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l+r+ vn vaceg++r+er+e ++kWr+r+++aGF+  p+s++++++ ++ l   ++v+  g++v+ee+g +++gW++r+L+++SaWr
  Ro07_G13993 562 LSRKFVNSVACEGRDRVERCEVFGKWRARMGMAGFELRPMSQSVTESLRHQLtsgNRVHHPGFTVKEENGGVCFGWMSRTLTVASAWR 649
                  ***********************************************99988333466789**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    
MQSGFNTGGR GGGGGGGGGL SDFYAGGGRS IGNTMNNHPS QPQYHRSQLP GLFMDPTASQ  60
IGRQTLNPAS LIGKRTLAEF QFHQQQNPYQ QNLTNQQNLY RSLKPRTATN FQHSSPISTL  120
SPIDFSSATS FTGSENSSSS STSSMLSQRY GLPLLQLRPQ PIINPTFQAS PPYVNTVQSV  180
QNRVSASAMD SEKKMISQVD SEKKMIDHRL QELEKQLLDD NDDDDDAGDA VSVITKSNSE  240
WIQNLIGPNQ TQKPVSPSPT SSSSSSSSVA SPATLICSKQ SLMEAASAIS EGKSEAAAEI  300
LTRLTQVSNP IPNSEQRLLE FMALALKSRV NPVDNPPPVA ELFTQEHAGS TQFLYEVSQC  360
FRLGFMAANH AILEATLAAD QSTTNKIHVI DFDIGQGGQY VHLLRALSTP QNGKPSVVKI  420
TTVPDNGGEE RLRTVRQNLS QIAKEVGVGL EFNVVSQKLS ELNRESLGCE PDEPIAVNFA  480
FKLYSMPDES VSTDNPRDEL LRRVKGLSPR VVTLVEQELN TNTAPFMARV NESCAYYGAL  540
LDSIESTVAR DKPDRVKAEE ALSRKFVNSV ACEGRDRVER CEVFGKWRAR MGMAGFELRP  600
MSQSVTESLR HQLTSGNRVH HPGFTVKEEN GGVCFGWMSR TLTVASAWR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816GGRGGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-180GRAS family protein