PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G13242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | G2-like | ||||||||
Protein Properties | Length: 232aa MW: 26522.9 Da PI: 9.1978 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.8 | 4.4e-12 | 92 | 143 | 5 | 50 |
G2-like 5 rWtpeLHerFveaveqLGG..sekAtPktilelmkvk....gLtlehvkSHL 50 Wt e H+r veav qLGG + kAtPk++l+lm + gLt + HL Ro07_G13242 92 SWTLEHHRRVVEAVIQLGGlsNSKATPKAVLKLMAEEdrrrGLTARMISHHL 143 7******************44469**********865333389999998888 PP | |||||||
2 | Myb_DNA-binding | 22.8 | 2.2e-07 | 92 | 145 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg.....kgRtlkqcksrwqk 46 +WT e + + v+av qlGg t+k++ + m g+t+ ++ +++ Ro07_G13242 92 SWTLEHHRRVVEAVIQLGGLsnskaTPKAVLKLMAeedrrRGLTARMISHHLSE 145 7*****************88**************************99999865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MATPRMFEWT LEHHKRFLDT YILLDGDNEK VGLYPVLRAE LLTLVGCCCT SLFLVSHFIL 60 LSELQKKSES LFCSKEVSFK GLYVAPKKLS SSWTLEHHRR VVEAVIQLGG LSNSKATPKA 120 VLKLMAEEDR RRGLTARMIS HHLSELLRLQ KETQRLIAIG SKGGEEGIEL SIKELEFLVF 180 EGLPQQQNSK KYTHVDDPLL RQHLGLLEQR NISHRISLHI IKSERELLKA FG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.4 | 1e-06 | G2-like family protein |