PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G12331

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 352aa MW: 40719.7 Da PI: 6.7179

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G12331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.5e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ +ee+ +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ Ro07_G12331 7 VPPGFRFHPTDEELVDYYLRKKVTARRIDL-DVIKDVDLYKIEPWDLQElcRIGTEEQsDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYA- 102 69**************************.9***********954555554445**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Ro07_G12331 103 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVT ARRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YAKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQASSSIL LMSFLHCLVF TFKCSYSTEA RGAFEVLFVQ 180 LMKQEEGWVV CRVFKKKLPS MRRMNEHESP CWYDEHVSFM PDLDSPNHNN SNSSINNQMA 240 YHGNFQNYPC KKELDHLPYQ HHVPNEHFFQ LPLLDSPKLL LQSSATAAVS SNSMTAAAYS 300 IDINQNFHAV YGNNSNELQA VDDDQLTDWR VLDKFVASQL SHDDVSKGNS YS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MNTFSHVPPG FRFHPTDEEL VDYYLRKKVT ARRIDLDVIK DVDLYKIEPW DLQELCRIGT  60
EEQSDWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YAKHDLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQASSSIL LMSFLHCLVF TFKCSYSTEA RGAFEVLFVQ  180
LMKQEEGWVV CRVFKKKLPS MRRMNEHESP CWYDEHVSFM PDLDSPNHNN SNSSINNQMA  240
YHGNFQNYPC KKELDHLPYQ HHVPNEHFFQ LPLLDSPKLL LQSSATAAVS SNSMTAAAYS  300
IDINQNFHAV YGNNSNELQA VDDDQLTDWR VLDKFVASQL SHDDVSKGNS YS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-109	NAC family protein