PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G12023

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 503aa MW: 55058.7 Da PI: 9.212

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G12023	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55	2e-17	198	247	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aaka+++a++k++g Ro07_G12023 198 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAALKFRG 247 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MEMKMIQANS KKGLFIPSTP KLGSATGFWV SNILRIKTES KVDTIMLDLN VDIITTATES 60 NYEEKARALE AEKLREDSGT SDSSVVNAEE DSYSNNTSPF IFDILKKDKH GLCNNNREDQ 120 IVPSPEFSTR SLFPETGDGG GGGGGEFGVG LASSNTTSRP QWLNLSFAES CGQTELKAVQ 180 QKQQQARKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHSAAKAYDR 240 AALKFRGVDA DINFVLSDYE EDMKQMRHLN KEEFVHVLRR QSNGASRGNS KFRGVAAAAA 300 AVVPKIGPFE VRMAQPIPGN KLIKCNGREA VTNFDPSIYE GEIVVEASTE GSGHNLDLSL 360 GISQPSIGQK RKAFEMANKE RPMVNGSASA AVGQQPLHAL AILSKHPALY SGIYPGFLQN 420 TEEMATDHHK RIQAVSSPRF SNWAWQINGN NNNVTPMPMF SIAASSGFSP SIATTPPSAN 480 NQRSPILQDN SASNVRLPFP TSL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MEMKMIQANS KKGLFIPSTP KLGSATGFWV SNILRIKTES KVDTIMLDLN VDIITTATES  60
NYEEKARALE AEKLREDSGT SDSSVVNAEE DSYSNNTSPF IFDILKKDKH GLCNNNREDQ  120
IVPSPEFSTR SLFPETGDGG GGGGGEFGVG LASSNTTSRP QWLNLSFAES CGQTELKAVQ  180
QKQQQARKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHSAAKAYDR  240
AALKFRGVDA DINFVLSDYE EDMKQMRHLN KEEFVHVLRR QSNGASRGNS KFRGVAAAAA  300
AVVPKIGPFE VRMAQPIPGN KLIKCNGREA VTNFDPSIYE GEIVVEASTE GSGHNLDLSL  360
GISQPSIGQK RKAFEMANKE RPMVNGSASA AVGQQPLHAL AILSKHPALY SGIYPGFLQN  420
TEEMATDHHK RIQAVSSPRF SNWAWQINGN NNNVTPMPMF SIAASSGFSP SIATTPPSAN  480
NQRSPILQDN SASNVRLPFP TSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	6e-61	AP2 family protein