PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G11487
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family AP2
Protein Properties Length: 385aa    MW: 43494.3 Da    PI: 5.6178
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G11487genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.91.2e-08104137137
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  Ro07_G11487 104 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYS 137
                  89****99**********99966...3.6*******95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
MHKLKRRRRQ KKLNLQRGHQ AQMDGKSSWN DIQKKKGRQG AYDSEDAAAH TYDLAALKYW  60
GPGTILNFPI ETYTKEIGEM QKVSKEEYLA SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA  120
RIGRVFGNKY LYLGTYSMIR FQSKPFEKGQ ASGSHVSYCS ARGFLLVSQV IHILDTQEEA  180
AAAYDMAAIE YRGTNAVTNF DISNYIDRIK SEEPQDPPPQ CSDVAQEEVE VKQEVHQFQP  240
QPQEQQEQQE REQNKEQILF SPKLQYPHVA PCIESSTTTM QDVMDPTNEH QCQFNWNFLD  300
TLLSVPDIPL DNKPSELPDF FEDLGFEENF DMIFGGASDV NLNGLLDTAP CGVQAGVPTN  360
LDDDGSSSSP SPSSTTTSVS CNYSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411LKRRRRQK
2636RRRRQKKLNLQRGHQAQMDGKSSWNDIQKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-65AP2 family protein