PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09519

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 963aa MW: 108156 Da PI: 7.8311

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09519	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.5	2e-09	204	276	11	83
trihelix 11 iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 ie +++ + +r+k ++ + +ev++++++ g++r +k+ kw+n+ ++++k+ e+e++ + e+ + +yf+ Ro07_G09519 204 IEHHSDISGQPNRAKTRADKDKEVAEFLQKNGINRDAKTAGTKWDNMLGEFRKVYEWERGAEREQIGNKSYFR 276 66778999999*************************************************9888888888885 PP

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence
MGETKGDNPK KQPQAQQQQQ QISASPNDPL EEASPLTVVV TGAAAPFNIP APLYVPISGA 60 TSSSSPFDQQ QFEAVNPKRP RYTSTGQWKL LPSPSSQQKQ TPTQSPSPNP KTQPQSHTTT 120 GASSSDTASS PSHSPLPSLS ATSGQDTTKT EGEEQNPSLH RHQYRRGKYV SPVWKPHEML 180 WLAKAWRAVY QSQGSDGSGS SSRIEHHSDI SGQPNRAKTR ADKDKEVAEF LQKNGINRDA 240 KTAGTKWDNM LGEFRKVYEW ERGAEREQIG NKSYFRLSPY ERKLHRLPAS FDEEVFDELA 300 QFMGSRMRTP PISRPGDSTR TQSLYVTTST ILPQPSSFRD DDLPLSGRTR QLMIMSGGGD 360 VPFYPGGRSG SLLGFDHLPH YHHQSSLDYA AGVSSSTSLT KELRRIGKIR MTWEESVSLW 420 AEEGEHHRGR VKIQGGSSFL NADELAFFDD SMVACTMEAF EDGPLRGFSV DRFVSGQQVK 480 VFGRRKPSTP GFTEKTQLPF AESSIRSMPP WEFQDPSEYY ITCLRVPPPS LPRLSELSSY 540 LLQPPPEELR FPLRKDVYRD LPQGKETFFT TSNELLDCRA ITFVSKFCCV DMVFIRKATS 600 SISVTEALQD QWPNLTGFVR NFCLWRGEEI DQVRSGHIDP CKSLVEKLKW TYNDLPYIFG 660 YYAIGNLVTL CALSKGAQDR IIRTNLHTVD LSSPAERLKA LFLCYRIAGL LPLLADRCFN 720 INSGTTSSSN GGATIYKVMY SPYSDFERVD LGNGNIVELT PYTVTRFFSN QRKWSAVKEI 780 YDFLDHRIPH AEYIHRSLER DLALVFKPRG CKLKPRNCDE LVEALKYVTK ALVALHDLSF 840 MHRDISWDKV MRSTERDNEW FLCGFDEAVG APQLNPFQVV AAERGEHAPE LERALHGVKV 900 DVWGLGHLVR TCGLAGVPKM LRELQNRCLD QNPEQRPTAA DCYHHLLQLQ SSLSVVTAGG 960 VMM

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence

MGETKGDNPK KQPQAQQQQQ QISASPNDPL EEASPLTVVV TGAAAPFNIP APLYVPISGA  60
TSSSSPFDQQ QFEAVNPKRP RYTSTGQWKL LPSPSSQQKQ TPTQSPSPNP KTQPQSHTTT  120
GASSSDTASS PSHSPLPSLS ATSGQDTTKT EGEEQNPSLH RHQYRRGKYV SPVWKPHEML  180
WLAKAWRAVY QSQGSDGSGS SSRIEHHSDI SGQPNRAKTR ADKDKEVAEF LQKNGINRDA  240
KTAGTKWDNM LGEFRKVYEW ERGAEREQIG NKSYFRLSPY ERKLHRLPAS FDEEVFDELA  300
QFMGSRMRTP PISRPGDSTR TQSLYVTTST ILPQPSSFRD DDLPLSGRTR QLMIMSGGGD  360
VPFYPGGRSG SLLGFDHLPH YHHQSSLDYA AGVSSSTSLT KELRRIGKIR MTWEESVSLW  420
AEEGEHHRGR VKIQGGSSFL NADELAFFDD SMVACTMEAF EDGPLRGFSV DRFVSGQQVK  480
VFGRRKPSTP GFTEKTQLPF AESSIRSMPP WEFQDPSEYY ITCLRVPPPS LPRLSELSSY  540
LLQPPPEELR FPLRKDVYRD LPQGKETFFT TSNELLDCRA ITFVSKFCCV DMVFIRKATS  600
SISVTEALQD QWPNLTGFVR NFCLWRGEEI DQVRSGHIDP CKSLVEKLKW TYNDLPYIFG  660
YYAIGNLVTL CALSKGAQDR IIRTNLHTVD LSSPAERLKA LFLCYRIAGL LPLLADRCFN  720
INSGTTSSSN GGATIYKVMY SPYSDFERVD LGNGNIVELT PYTVTRFFSN QRKWSAVKEI  780
YDFLDHRIPH AEYIHRSLER DLALVFKPRG CKLKPRNCDE LVEALKYVTK ALVALHDLSF  840
MHRDISWDKV MRSTERDNEW FLCGFDEAVG APQLNPFQVV AAERGEHAPE LERALHGVKV  900
DVWGLGHLVR TCGLAGVPKM LRELQNRCLD QNPEQRPTAA DCYHHLLQLQ SSLSVVTAGG  960
VMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-07	Trihelix family protein