PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G09508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26944.8 Da PI: 9.7806 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.5 | 9.9e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+++e+ss Ro07_G09508 9 KRIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRIHEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 72.3 | 1.5e-24 | 89 | 175 | 9 | 95 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + ++++ +l++e+ak+ k+ie L+ +qR+llG dL+s+s +eL+q+ +qLe+sl+++R++K +ll+eqi++l++k + l een +L+ Ro07_G09508 89 VRTEQYTQLKNESAKMAKQIEILEASQRRLLGHDLDSCSAQELHQISDQLERSLRNVRERKAHLLKEQIQQLKEKGRLLLEENAKLH 175 6778999******************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MVRGKIEMKR IENVTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRIHEFSSS 60 DMQQTIKRYH KHAKAVQTNT FEVEKYMQVR TEQYTQLKNE SAKMAKQIEI LEASQRRLLG 120 HDLDSCSAQE LHQISDQLER SLRNVRERKA HLLKEQIQQL KEKGRLLLEE NAKLHIECCA 180 RPWQQHLVEE KGGGGAAASY SRMNSSQSSS SQTISNSDQL ETRLFIGPPV MRCE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 1e-71 | MIKC_MADS family protein |