PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09494
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 431aa    MW: 46973.2 Da    PI: 7.5889
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09494genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08109129526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ + G C+yGdrCk+ H+
  Ro07_G09494 109 VCNYWVQ-GNCSYGDRCKYLHS 129
                  6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MDVDGGDSKR IFRRLGGPQS DPNKNQKVCY HWRAGKCNRH PCPYLHRELP SPPVQHGLNG  60
TASSKRPHAF AATTDGPRGR GPNSFNGGPS STWGRTGANR VFVRKMDKVC NYWVQGNCSY  120
GDRCKYLHSW SMGDCVSLLT TLEGHQKVVS GIALPSGSDK LYTGSKDESV RVWDCQSAQC  180
LGVINLGGEV GCMISEGPWI FVGIPNAVKA WNTQANSELS LSGPVGQVYA LVVGNDLLFA  240
GTQDGSILAW KFNSVTNCFE PAASLNGHTL AVVSLVVGAN RLYSGSMDHS IRVWSLENLQ  300
CIQTLTEHTS VVMSVLCWDQ FLLSCSLDKT LKIWAATQSG NLEVTYTHEE EHGLLALCGM  360
HDSEAKPVLL CSCNDNTVRL YDLPSFSERG KIFSKQEIRE IQVGPGGLFF TGDGTGQVRV  420
WKWLAEPVAT A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein