PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G09490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25165.9 Da PI: 4.8866 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2.1e-18 | 71 | 121 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+Wv+e+r+p +k++r++lg+f tae+Aa+a++ a+ +l+g Ro07_G09490 71 PVFRGVRRRN-SGKWVCEVREP---NKQTRIWLGTFPTAEMAARAHDVAAIALRG 121 579****888.8******9998...336*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MDGFSTFTHY YDHHTHYPVG SDLPESSSAS DNNSGGGGVG RMTLSDEEVL LAATYPKKRA 60 GRKKFKETRH PVFRGVRRRN SGKWVCEVRE PNKQTRIWLG TFPTAEMAAR AHDVAAIALR 120 GRSACLNFAD SAWRLPVPAS TSAKDIQTAA AEAAEAFRPT EEESEVVSEA AAAAESEPVF 180 CMDEEFGMPG LLANMAEGMC LPPPHYFGDN GYGDDDMETY ADVSLWSYSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-68 | ERF family protein |