PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09488
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 235aa    MW: 24638.2 Da    PI: 5.0791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09488genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.2e-1566114255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++G+r ++ +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  Ro07_G09488  66 LFRGIR-CR-SGKWVSEIREPRK---STRIWLGTYAKPEMAAAAYDVAAIALKG 114
                  589**9.55.6*********843...5***********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MADPPYGNGP RSNEQPSNSN PPFSIQLPPT SSNVSDQQDQ DLSSSPGTAL RSPSGGSISS  60
PRRHPLFRGI RCRSGKWVSE IREPRKSTRI WLGTYAKPEM AAAAYDVAAI ALKGPDTALN  120
FPNAIITYPI PASSAASDIR AAAARAAASR MDKEGESSYR GAGRVGTAGG GVTSDGGGGG  180
GGGQEFVDED ALLNMPNLLV DMAEGMLSPE HAPEPDRLSS SSTGYYWLLT LREET
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-30ERF family protein