PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09486
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARR-B
Protein Properties Length: 867aa    MW: 96194.2 Da    PI: 5.5916
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09486genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.28.7e-24226279155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k +++Wt+ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+++SHLQkYR+
  Ro07_G09486 226 KSKVVWTNSLHNQFLMAIRHI-GLDKAVPKRILEFMNVPGLTRENIASHLQKYRM 279
                  6799*****************.********************************7 PP
2Myb_DNA-binding27.19.7e-09229278248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT  ++ +++ a++  G +   +k+I + m+  g+t++++ s++qky+
      Ro07_G09486 229 VVWTNSLHNQFLMAIRHIGLDkaVPKRILEFMNvPGLTRENIASHLQKYR 278
                      68***********************************************7 PP
3Response_reg647.3e-22181271107
                   EEEESSSHHHHHHHHHHHH...HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
  Response_reg   1 vlivdDeplvrellrqale...kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                   +l+vdD+ + +++  ++l+   + g ++v +++++ +al++l++ +  +Dl+++D+ mp+m+Glel k  +ee  +lp+i+++a ++e+++ + l+ 
   Ro07_G09486  18 ILVVDDDITTLNIS-NFLDnmiDCGSSHVVTVRNPIDALAILRKGKysFDLVVTDLHMPQMNGLELQKLVHEEF-ELPVIMMSADDKESMIMKSLEG 112
                   78999988777654.4444455567789**************999999**********************9999.********************** PP

                   TESEEEESS--HHHH CS
  Response_reg  93 GakdflsKpfdpeel 107
                   G+  +++Kp++++++
   Ro07_G09486 113 GVVYYIVKPVSKDDI 127
                   ***********9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    
MDAEGVVEER QYSANINILV VDDDITTLNI SNFLDNMIDC GSSHVVTVRN PIDALAILRK  60
GKYSFDLVVT DLHMPQMNGL ELQKLVHEEF ELPVIMMSAD DKESMIMKSL EGGVVYYIVK  120
PVSKDDIKMV WQYVVQSRKS RFSNVTIEEM MEGAPGEFAP GQKLQGPGEL KDLDCVTSFD  180
DDVNYKEGHR NDQSSKRKTT RKRDRDMEDE EDDDGEHDRR LLATKKSKVV WTNSLHNQFL  240
MAIRHIGLDK AVPKRILEFM NVPGLTRENI ASHLQKYRMF LKRVAEKARL SKCLSERVLR  300
SNLVYSLPTT PSFNGVQREQ YAEYLKQQLQ MNDLGLAPPL QNTLAPLSTA SHLGSSSFRF  360
PLNYNLQPAA LNLASSSSGP HYHQQFGPGQ SRLLMNNAPH QQRPMQLGNG MNLFSQANRG  420
SGFGMQTMNN NVGHIRGYGG PKNKNGGNGF MNGGTNWMQM YSQHSQAKQQ QQTLNFTSNP  480
FNFRATTGIS SPSIDNMMNP FNNVNLGTNF RGRTSQAAGG FNNFINGGYN NGLVINNEVI  540
NGLTNEVRNV NLNGSTFNAP TQGTTIGNNV SSSRIETNSA NQFAPILPRH NQQQPNQYGM  600
SSTVGGGKNE FSFSALSNTT SNFNNISLAD DDDDIMVINN ILLQQLDNCQ PPSHQFNLAL  660
LINHCVKKQG REEVPVNFTS MLYQDEDPEP TLTPTVNTQV HPNINHAANG QVQLNPNPSV  720
NGEVQLNPNP FVIGKVQLNP NPFVNGEVQL NPTPFVNDQD QLNPNSDANG QLELNPTPIV  780
NSQVQLNHDS AFNDEAQLNP NLCVNYLNSN PAVNSQLELN RTANRVGNPD YLSSSPAANG  840
QLDELNPTAN QEGEDDFLNA LMAFGNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.17e-54ARR-B family protein