PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G09486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ARR-B | ||||||||
Protein Properties | Length: 867aa MW: 96194.2 Da PI: 5.5916 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 75.2 | 8.7e-24 | 226 | 279 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++Wt+ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+++SHLQkYR+ Ro07_G09486 226 KSKVVWTNSLHNQFLMAIRHI-GLDKAVPKRILEFMNVPGLTRENIASHLQKYRM 279 6799*****************.********************************7 PP | |||||||
2 | Myb_DNA-binding | 27.1 | 9.7e-09 | 229 | 278 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT ++ +++ a++ G + +k+I + m+ g+t++++ s++qky+ Ro07_G09486 229 VVWTNSLHNQFLMAIRHIGLDkaVPKRILEFMNvPGLTRENIASHLQKYR 278 68***********************************************7 PP | |||||||
3 | Response_reg | 64 | 7.3e-22 | 18 | 127 | 1 | 107 |
EEEESSSHHHHHHHHHHHH...HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqale...kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 +l+vdD+ + +++ ++l+ + g ++v +++++ +al++l++ + +Dl+++D+ mp+m+Glel k +ee +lp+i+++a ++e+++ + l+ Ro07_G09486 18 ILVVDDDITTLNIS-NFLDnmiDCGSSHVVTVRNPIDALAILRKGKysFDLVVTDLHMPQMNGLELQKLVHEEF-ELPVIMMSADDKESMIMKSLEG 112 78999988777654.4444455567789**************999999**********************9999.********************** PP TESEEEESS--HHHH CS Response_reg 93 GakdflsKpfdpeel 107 G+ +++Kp++++++ Ro07_G09486 113 GVVYYIVKPVSKDDI 127 ***********9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 867 aa Download sequence |
MDAEGVVEER QYSANINILV VDDDITTLNI SNFLDNMIDC GSSHVVTVRN PIDALAILRK 60 GKYSFDLVVT DLHMPQMNGL ELQKLVHEEF ELPVIMMSAD DKESMIMKSL EGGVVYYIVK 120 PVSKDDIKMV WQYVVQSRKS RFSNVTIEEM MEGAPGEFAP GQKLQGPGEL KDLDCVTSFD 180 DDVNYKEGHR NDQSSKRKTT RKRDRDMEDE EDDDGEHDRR LLATKKSKVV WTNSLHNQFL 240 MAIRHIGLDK AVPKRILEFM NVPGLTRENI ASHLQKYRMF LKRVAEKARL SKCLSERVLR 300 SNLVYSLPTT PSFNGVQREQ YAEYLKQQLQ MNDLGLAPPL QNTLAPLSTA SHLGSSSFRF 360 PLNYNLQPAA LNLASSSSGP HYHQQFGPGQ SRLLMNNAPH QQRPMQLGNG MNLFSQANRG 420 SGFGMQTMNN NVGHIRGYGG PKNKNGGNGF MNGGTNWMQM YSQHSQAKQQ QQTLNFTSNP 480 FNFRATTGIS SPSIDNMMNP FNNVNLGTNF RGRTSQAAGG FNNFINGGYN NGLVINNEVI 540 NGLTNEVRNV NLNGSTFNAP TQGTTIGNNV SSSRIETNSA NQFAPILPRH NQQQPNQYGM 600 SSTVGGGKNE FSFSALSNTT SNFNNISLAD DDDDIMVINN ILLQQLDNCQ PPSHQFNLAL 660 LINHCVKKQG REEVPVNFTS MLYQDEDPEP TLTPTVNTQV HPNINHAANG QVQLNPNPSV 720 NGEVQLNPNP FVIGKVQLNP NPFVNGEVQL NPTPFVNDQD QLNPNSDANG QLELNPTPIV 780 NSQVQLNHDS AFNDEAQLNP NLCVNYLNSN PAVNSQLELN RTANRVGNPD YLSSSPAANG 840 QLDELNPTAN QEGEDDFLNA LMAFGNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 7e-54 | ARR-B family protein |