PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09468
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 809aa    MW: 88530.2 Da    PI: 5.6144
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09468genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-21111166156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++k +++t++q++eLe++F+++++p++++r +L+++lgL+++qVk+WFqNrR+++k
  Ro07_G09468 111 KKKYHRHTPNQIQELESFFKECPHPDEKQRLDLSRRLGLETKQVKFWFQNRRTQMK 166
                  79999************************************************999 PP
2START179.71.7e-563225432206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                  la+ea++elv++a+a+ p+W kss    e +n d +++      +    + ++a+r++ +v+ ++  lve+++d + +W+ +++    +a+t+  is+
  Ro07_G09468 322 LALEAMDELVRMAQADTPLWIKSSdggsETLNIDLYRTFSCM-SArpsgFVTDASRDTCMVIINSLALVETMMDAN-RWTDMFPslvaRASTIGMISN 417
                  689*********************988766666666553322.2246777**************************.********************* PP

                  T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
        START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                  g      galq+m aelq+lsplvp R   f+R+++++ +g+wv+vdvS+d +q+ ++   +  +++lpSg+++++++ng+skvtw+eh +++++ +h
  Ro07_G09468 418 GvsgtrdGALQVMHAELQMLSPLVPvRPLKFLRFSKKHAEGVWVVVDVSIDINQDGSNANTFLNCRRLPSGCIVQDMPNGYSKVTWIEHSEYDESNVH 515
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 179 wllrslvksglaegaktwvatlqrqcek 206
                  +ll++l++sg+ +ga++w+atlqr ce+
  Ro07_G09468 516 QLLQPLLRSGMGFGAQRWLATLQRECES 543
                  **************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    
MSFGGLISSG NSGGVGGSRA VAEIAPHSSG AIAHPHFIPN SMQSSSALSL SIQNMDGHTE  60
LDLIAESFDA GIIGRLREDE FDQSRSGSDH FDGASGDDQD PGDEDDQRRR KKKYHRHTPN  120
QIQELESFFK ECPHPDEKQR LDLSRRLGLE TKQVKFWFQN RRTQMKTQLE RHENIILRQE  180
NDKLRAENGV MKDAMSNPMC HNCGGPAIPG QISFDEHQLR IENARLNDEL NRICTLAQKF  240
LGRPISNLAT PPSLPSSTTG LDLAMGINGM GSLNAGANGL TMGLDVGDGV ASSSPMTLMK  300
PSIGMASNDM QYLNDRSAYI DLALEAMDEL VRMAQADTPL WIKSSDGGSE TLNIDLYRTF  360
SCMSARPSGF VTDASRDTCM VIINSLALVE TMMDANRWTD MFPSLVARAS TIGMISNGVS  420
GTRDGALQVM HAELQMLSPL VPVRPLKFLR FSKKHAEGVW VVVDVSIDIN QDGSNANTFL  480
NCRRLPSGCI VQDMPNGYSK VTWIEHSEYD ESNVHQLLQP LLRSGMGFGA QRWLATLQRE  540
CESLTFLISS TSPNEVSRGL SMNSKKSMLR LAQRMMQSFC TGICGSSVRQ WDKLCIDNVS  600
DNVRVMVRQS LDVGEPSGFV LSAATSVWMP VSRSTLFDFL RDWQLRGQWD ILVGCRPLQA  660
MVQIDKDHGG GNSVSLFNAK GLDANHNNNM LMFQETRNDA SGSVVVYAPI TSTSSGIMMN  720
FVYDGWDSTC VELLPSGFAI LPCGTSDYAK GEGNGCVDGG CLLTVGFQIV CDGGQPTSKL  780
TLHSVNTIID LISSTIQKIK TALQINDGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein