PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09467
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 391aa    MW: 44357.2 Da    PI: 7.7396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09467genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08104124526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ + G C+yGdrC++ H+
  Ro07_G09467 104 VCNYWVQ-GNCNYGDRCNYLHS 124
                  6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
PRGIFIHFFL FLLLFVFSLS LVFFLSIFFL SFLRFFFWER RKERGLSRLE TEREREREAV  60
IRVLVRGTVA TCTTRSQRNG VAFASSTWGR TGANRVFVRK MDKVCNYWVQ GNCNYGDRCN  120
YLHSWSMGDC VSLLTTLEGH QKVVSGIALP SGSDKLYTGS KDESVRVWDC QSAHCLGVIN  180
LGGEVGWMIS EGPLIFIGIP NAVKDGSILA WKFNSVTKCF ELAASLNGHS CSISLVIGAN  240
RLDSGSMYHS VRVWSLENRA YFSCDVCSLL GLIWAATQSG DLEVTYTREE EHGLLTLCGM  300
HDSEAKPVLF LSFPRGAKFS ENRRCEKSMS ALVACFSLVV ELVKCEYGSG WLNQLRLPER  360
EDLFGAHCIL IFFLFVYVIY LVYFHFEPYN E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.15e-88C3H family protein