PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G09467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 391aa MW: 44357.2 Da PI: 7.7396 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.7e-08 | 104 | 124 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ + G C+yGdrC++ H+ Ro07_G09467 104 VCNYWVQ-GNCNYGDRCNYLHS 124 6******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence |
PRGIFIHFFL FLLLFVFSLS LVFFLSIFFL SFLRFFFWER RKERGLSRLE TEREREREAV 60 IRVLVRGTVA TCTTRSQRNG VAFASSTWGR TGANRVFVRK MDKVCNYWVQ GNCNYGDRCN 120 YLHSWSMGDC VSLLTTLEGH QKVVSGIALP SGSDKLYTGS KDESVRVWDC QSAHCLGVIN 180 LGGEVGWMIS EGPLIFIGIP NAVKDGSILA WKFNSVTKCF ELAASLNGHS CSISLVIGAN 240 RLDSGSMYHS VRVWSLENRA YFSCDVCSLL GLIWAATQSG DLEVTYTREE EHGLLTLCGM 300 HDSEAKPVLF LSFPRGAKFS ENRRCEKSMS ALVACFSLVV ELVKCEYGSG WLNQLRLPER 360 EDLFGAHCIL IFFLFVYVIY LVYFHFEPYN E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 5e-88 | C3H family protein |