PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09022

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 561aa MW: 62630.8 Da PI: 5.414

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09022	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1.1e-51	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lp GfrF+Ptdeel+++yL+ k++g++ ++ +vi+e+d++k ePwdLp + + +++ ew+fF+++dkky++g r nrat++gyWkatgkd++++s + Ro07_G09022 13 LPLGFRFRPTDEELIDYYLRSKINGNHKQV-SVIREIDVCKREPWDLPdlSVIPTQDPEWFFFCPQDKKYPNGFRLNRATSAGYWKATGKDRKIKS-G 108 699**********************999.99**********96447777899**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+g+kktLvf++grapkg++t+Wvmheyr Ro07_G09022 109 TNLIGMKKTLVFHTGRAPKGKRTNWVMHEYRT 140 9***************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MVMDIAVASL SSLPLGFRFR PTDEELIDYY LRSKINGNHK QVSVIREIDV CKREPWDLPD 60 LSVIPTQDPE WFFFCPQDKK YPNGFRLNRA TSAGYWKATG KDRKIKSGTN LIGMKKTLVF 120 HTGRAPKGKR TNWVMHEYRT TQQELDGTNP GQSPFVLCRL FKKQDESIEI SNCDETEPAV 180 SSPSVVKSPL EDTQSALPLV PPSPSFPMQP EKPPTRAECT IADNSDEMAS DPQPVSECPS 240 NSCNDYDGPG ELDLPLEEYL RRFYDPLEEP LFSPFHSQME VEHCYPGSNV INNGHHRVSS 300 AIESETKNVA SIKDHGSCSD ADAKLNEVLY MTELQTPIWL DGNIDRKGSM LIETTPQDYD 360 QSSRVEVSSY HSNALLSPGG GTGIRIMTRQ TPPTSTVRQS IMTQGEAPRR ILYQRELKVG 420 SVQCKNMSKD WTCRPEDHER KPIGVEETRY SETKASSDAG NALDKPLETL IVESSENSKI 480 SQCQTISSGS NIMSMGSILT GKNVPSVVLK ASPAGHSIWS CAFMFRVIVG AILFIIFASM 540 WGFQVLKLLE DFLPCGDSKF F

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MVMDIAVASL SSLPLGFRFR PTDEELIDYY LRSKINGNHK QVSVIREIDV CKREPWDLPD  60
LSVIPTQDPE WFFFCPQDKK YPNGFRLNRA TSAGYWKATG KDRKIKSGTN LIGMKKTLVF  120
HTGRAPKGKR TNWVMHEYRT TQQELDGTNP GQSPFVLCRL FKKQDESIEI SNCDETEPAV  180
SSPSVVKSPL EDTQSALPLV PPSPSFPMQP EKPPTRAECT IADNSDEMAS DPQPVSECPS  240
NSCNDYDGPG ELDLPLEEYL RRFYDPLEEP LFSPFHSQME VEHCYPGSNV INNGHHRVSS  300
AIESETKNVA SIKDHGSCSD ADAKLNEVLY MTELQTPIWL DGNIDRKGSM LIETTPQDYD  360
QSSRVEVSSY HSNALLSPGG GTGIRIMTRQ TPPTSTVRQS IMTQGEAPRR ILYQRELKVG  420
SVQCKNMSKD WTCRPEDHER KPIGVEETRY SETKASSDAG NALDKPLETL IVESSENSKI  480
SQCQTISSGS NIMSMGSILT GKNVPSVVLK ASPAGHSIWS CAFMFRVIVG AILFIIFASM  540
WGFQVLKLLE DFLPCGDSKF F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	7e-89	NAC family protein