PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G08967
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family E2F/DP
Protein Properties Length: 334aa    MW: 37050.6 Da    PI: 5.4994
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G08967genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.69.1e-2877159271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Ro07_G08967  77 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpingvtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 159
                  789********...*****999*******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MGTRSRAEED EDMPGGQSVS MSGSVGSPSS RSEQTMATPA GDNTSVRLNH PDINGDDAGS  60
VGKKKKRGQR AAGGDKNGRG LRQFSMKVCE KVESKGRTTY NEVADELVAE FSDPINGVTS  120
PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSLNDIEE LKTERLGLRS  180
RIEKKAIYLQ ELEEQYVGLQ NLIQRNEQLY CSGDAPSGGV SLPFILVQTR PHATVEVEIS  240
EDMQLVHFDF NSTPFELHDD NYVLKAMKFC ERPQGDGMTQ NYVADGGEGS SMSAMYQQPM  300
PPQIPLPPMV NTPVRPPTSP PLPGILKARV KHEH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-134E2F/DP family protein