PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G08949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 36192.4 Da PI: 7.268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.5e-18 | 14 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv++ +++Ggg +W+ +++ g++R++k+c++rw +yl Ro07_G08949 14 KGPWTEEEDEKLVKYMERYGGGgggrggiSWRQVPKLAGLKRCGKSCRLRWTNYL 68 79***************************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 74 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++ +++++++ G++ W++Ia+ ++ gRt++++k++w+++l Ro07_G08949 74 RGNLSHQEEQTIINLHALVGNK-WSAIASNLP-GRTDNEIKNFWNTHL 119 788999****************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence |
MGRSACCDEN GLKKGPWTEE EDEKLVKYME RYGGGGGGRG GISWRQVPKL AGLKRCGKSC 60 RLRWTNYLRP DIKRGNLSHQ EEQTIINLHA LVGNKWSAIA SNLPGRTDNE IKNFWNTHLK 120 KKLLQMGIDP VTHTPITTPH NHHISTTATS TLPPQLLAAT YNNLMSNNTT PWDWAHLQYL 180 NSVHATQIVA EILRGQGLVI SNSTTPTSTT TNSYDHYPYI LGMEMEAAVT NYYSYLLGSS 240 PSSSTSVPDH QLVYHHGHGL GYDYADLTMI NRHSNCPQAT SLGNTTTTTT TSMDDDNQEA 300 TNDQSYWKRH IMDIDIASSQ IWSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-70 | MYB family protein |