PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G07918
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 282aa    MW: 31017.1 Da    PI: 8.3621
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G07918genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-393493261
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks
  Ro07_G07918 34 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKS 93
                 6899******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDTAQWPQEI GLEKTMEENM GSDARLLSEK RARPQEQLNC PRCNSTNTKF CYYNNYSLTQ  60
PRYFCKTCRR YWTEGGTLRN VPVGGGSRKN KKSTPSTASS SAISSSKNII PDLNPPSLSH  120
FSSQNPRMTH EGQDLNLAFS ANVEHYNGTS TTTHYVNHHQ VPKMESNSSS ALELLRSTGI  180
ASRGVNSYVP NSMHDSNGVL YSSSGFSLQE FKPSQLGFCV DGLGSRYGDH PQENGGSGRL  240
LFPFGDLKQI SSTTTGHHEL DQNKGQGNPT GYWNGLMGGG SW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.44e-70Dof family protein