PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07895

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 248aa MW: 28514.5 Da PI: 4.7387

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07895	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5e-19	45	99	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +f++eq++ Le+ Fe+++ + +++ +LAk+lgL+ rqV +WFqN+Ra++k Ro07_G07895 45 NNKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 99 56788*************************************************9 PP
2	HD-ZIP_I/II	122.4	2.2e-39	46	137	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+++LE+ Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e L+ke+++L ++l++ Ro07_G07895 46 NKKRFSDEQIRSLESIFESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASRFEVLKKEKQALVSQLQK 137 79***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MIPNNNKMLE LDQGEYSSTP EEAEAFYIND SLGAGSTLKK KSSKNNKKRF SDEQIRSLES 60 IFESESRLEP RKKLQLAKEL GLQPRQVAIW FQNKRARWKS KQLERDYSIL RANYNNLASR 120 FEVLKKEKQA LVSQLQKMND MMQRPKEERQ NIIDGESDNG GDATRSESKG TPNYQVSLEK 180 SEHGLGVMSD DDSSIKAEYF GLDEEPNLVN FVESADGSLT SPEDWGRLNS DGLFDQSSSD 240 YQWWDFWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-71	HD-ZIP family protein