PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07880

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 418aa MW: 46838.7 Da PI: 5.9549

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07880	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.7	1.6e-51	15	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yL+kkv++++++l +vi +vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk + s Ro07_G07880 15 VPPGFRFHPTEEELLQYYLRKKVSNQSIDL-DVICDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVISS- 110 69**************************.99**********964444222455******************************9999. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g++ktLvfykgrap+g+k+dW+mheyrl Ro07_G07880 111 NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 8889*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MTENVSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSNQ SIDLDVICDV DLNKLEPWDI 60 QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVISS NCRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNTSSI TNVSITVVGE AAEEGWVVCR IFKKKNLHKS 180 LSSPIMSTSI SSSITAEITR SSSQMFDDDD QEGAFEEMLQ YIGSRTCKEE INEHYHLHPI 240 NTGNSDNMNG YHDHGDRFLK LPSLESPNST SSQNGYQPII NHEDMVIDQN EGTIANQHLG 300 YQHVDDSASL TNWAALDRLV ASQLNGGHET GSSRQFSCLI EPTLNVYCTS TTDNELQLPS 360 TLRSSTSSNS SSKSYHATQP EYNNSEIDLW TTFGAARLQS SSPLSSSDAL CHVSNAPI

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MTENVSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSNQ SIDLDVICDV DLNKLEPWDI  60
QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVISS NCRRIGMRKT  120
LVFYKGRAPH GQKSDWIMHE YRLDDNTSSI TNVSITVVGE AAEEGWVVCR IFKKKNLHKS  180
LSSPIMSTSI SSSITAEITR SSSQMFDDDD QEGAFEEMLQ YIGSRTCKEE INEHYHLHPI  240
NTGNSDNMNG YHDHGDRFLK LPSLESPNST SSQNGYQPII NHEDMVIDQN EGTIANQHLG  300
YQHVDDSASL TNWAALDRLV ASQLNGGHET GSSRQFSCLI EPTLNVYCTS TTDNELQLPS  360
TLRSSTSSNS SSKSYHATQP EYNNSEIDLW TTFGAARLQS SSPLSSSDAL CHVSNAPI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-108	NAC family protein