PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07802

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 413aa MW: 45265.9 Da PI: 6.507

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07802	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.9e-17	40	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Ede l ++v q+G ++W+ Iar ++ gR++k+c++rw + Ro07_G07802 40 RGSWSPREDEVLTRLVSQFGARNWSVIARGIP-GRSGKSCRLRWCNQ 85 89****************************.*********985 PP
2	Myb_DNA-binding	54.3	3.1e-17	92	136	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Ro07_G07802 92 RKPFTDEEDRIIVAAHAAHGNK-WAIIAKLLP-GRTDNAIKNHWNST 136 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MTVPNDAASK PDHRPGEPDD LSALGDDGTD GAAVASGKVR GSWSPREDEV LTRLVSQFGA 60 RNWSVIARGI PGRSGKSCRL RWCNQLNPGV KRKPFTDEED RIIVAAHAAH GNKWAIIAKL 120 LPGRTDNAIK NHWNSTLKRG RKYIPRTRNL MEDSSLDRTK TSSEETLSVG NISSLRTPEG 180 REVLIVDNSF NQLDGRCQIE EGFGVAELKD HSTFVAESKE QSTLCRPVAR ISAFRAYNPS 240 SGPADGYVVP RPVPIHGPLV QTSKLDFDFC NSLEGDCNEP TVPLRCGHGC CDQSQGQPQN 300 SLLGPEFIDY EEPPSFCSPE LISCATDLNN IAWIKSGLEN RETRMAGNVP SQRISQGAAT 360 SSQMGFSGMY MMNGHMCFEE GQNRLMGMMT EMLSTQMPTR QSFAMPTEVK GLS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MTVPNDAASK PDHRPGEPDD LSALGDDGTD GAAVASGKVR GSWSPREDEV LTRLVSQFGA  60
RNWSVIARGI PGRSGKSCRL RWCNQLNPGV KRKPFTDEED RIIVAAHAAH GNKWAIIAKL  120
LPGRTDNAIK NHWNSTLKRG RKYIPRTRNL MEDSSLDRTK TSSEETLSVG NISSLRTPEG  180
REVLIVDNSF NQLDGRCQIE EGFGVAELKD HSTFVAESKE QSTLCRPVAR ISAFRAYNPS  240
SGPADGYVVP RPVPIHGPLV QTSKLDFDFC NSLEGDCNEP TVPLRCGHGC CDQSQGQPQN  300
SLLGPEFIDY EEPPSFCSPE LISCATDLNN IAWIKSGLEN RETRMAGNVP SQRISQGAAT  360
SSQMGFSGMY MMNGHMCFEE GQNRLMGMMT EMLSTQMPTR QSFAMPTEVK GLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-95	MYB family protein