PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07785

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 821aa MW: 91142.7 Da PI: 9.962

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07785	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.9	1.1e-10	266	303	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +e++ LA+++gL+ +qV++WF N R + Ro07_G07785 266 FEHflHPYPSDSEKQMLAQQTGLSRTQVSNWFINSRVR 303 554458******************************88 PP
2	BELL	86	4.4e-28	131	200	2	71
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 r e+q k ++L +l+eV+krYk y++q++ v++sFe + glg+a+pY+s+A kai +hF cLk+ai ++ Ro07_G07785 131 RVEVQFKNSRLTIMLDEVYKRYKLYCQQMESVVASFESIDGLGNAAPYISFAIKAILKHFGCLKNAILDR 200 7899***************************************************************886 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MAGDGFEAIH FPHQSRRDEL RLINLQNNPP QPQLSLFTPT MATHEAPFSL HFLDSQQHDH 60 RVSFHGGGFR SSVPLGPFTG YASILKRSRF LKPAQQLLED FCGSGRADSD PHTLNYLSGR 120 AKDPIAALSD RVEVQFKNSR LTIMLDEVYK RYKLYCQQME SVVASFESID GLGNAAPYIS 180 FAIKAILKHF GCLKNAILDR LQSKGKSTLG DFSLVKDETR GVSKRGLHHS QNSNHHNLTN 240 NLHLSEFRSQ RGLPENAVAV MRTWLFEHFL HPYPSDSEKQ MLAQQTGLSR TQVSNWFINS 300 RVRLWKPMVE EIHGLETQQA QAQTPSVSDS MGKNVRMASL RPSSLENHLH SGTLPRTKRS 360 RTNEHCDMSK QSETQRNGGD FESLTRNYLH MSSGSHEAVI TKSHAQFKLP EYAKPNETDI 420 PRNATKCMVS HHNGSDFAVH SPHATFLAKA EVQMKRSFRA EQESCLGSTV GMQTEARVGV 480 VVEGGGQRAL HTGHGGVAVA QSLPQPQRKS LQQQRQSQIG TVSQLLAGGV AGALAKTCTA 540 PLARLTILFQ IQGMHSDVAT MRKASIWREA SRIAGEEGFR AFWKGNLVTI AHRLPYSSVN 600 FYAYEQYKKI LQTVPGLKKS RDNMSTDICV HFVGGGLAGI TAATATYPLD LVRTRLAAQT 660 NVLYYRGIWH ALRTITRDEG IFGLYKGLGA TLLGVGPSIA ISFTVYETLR SYWQSQRPDD 720 STVLVSLACG SLSGIASSTA TFPLDLVRRR KQLEGVGGRA RVYTTGLFGT FKHIFRTEGL 780 RGLYRGILPE YYKVVPGVGI CFMTYETLKM LLADVSATIY D

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MAGDGFEAIH FPHQSRRDEL RLINLQNNPP QPQLSLFTPT MATHEAPFSL HFLDSQQHDH  60
RVSFHGGGFR SSVPLGPFTG YASILKRSRF LKPAQQLLED FCGSGRADSD PHTLNYLSGR  120
AKDPIAALSD RVEVQFKNSR LTIMLDEVYK RYKLYCQQME SVVASFESID GLGNAAPYIS  180
FAIKAILKHF GCLKNAILDR LQSKGKSTLG DFSLVKDETR GVSKRGLHHS QNSNHHNLTN  240
NLHLSEFRSQ RGLPENAVAV MRTWLFEHFL HPYPSDSEKQ MLAQQTGLSR TQVSNWFINS  300
RVRLWKPMVE EIHGLETQQA QAQTPSVSDS MGKNVRMASL RPSSLENHLH SGTLPRTKRS  360
RTNEHCDMSK QSETQRNGGD FESLTRNYLH MSSGSHEAVI TKSHAQFKLP EYAKPNETDI  420
PRNATKCMVS HHNGSDFAVH SPHATFLAKA EVQMKRSFRA EQESCLGSTV GMQTEARVGV  480
VVEGGGQRAL HTGHGGVAVA QSLPQPQRKS LQQQRQSQIG TVSQLLAGGV AGALAKTCTA  540
PLARLTILFQ IQGMHSDVAT MRKASIWREA SRIAGEEGFR AFWKGNLVTI AHRLPYSSVN  600
FYAYEQYKKI LQTVPGLKKS RDNMSTDICV HFVGGGLAGI TAATATYPLD LVRTRLAAQT  660
NVLYYRGIWH ALRTITRDEG IFGLYKGLGA TLLGVGPSIA ISFTVYETLR SYWQSQRPDD  720
STVLVSLACG SLSGIASSTA TFPLDLVRRR KQLEGVGGRA RVYTTGLFGT FKHIFRTEGL  780
RGLYRGILPE YYKVVPGVGI CFMTYETLKM LLADVSATIY D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	1e-68	TALE family protein