PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G07753
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 230aa    MW: 25137.3 Da    PI: 5.5194
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G07753genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.83.2e-377103196
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                  +C aCk+lrrkC++dCv+apyf+ ++ + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdPvyG+v+ i+ lqqq++ l++e+a+
  Ro07_G07753   7 SCGACKFLRRKCTSDCVFAPYFCYDEaATHFAAVHKVFGASNVSKLLLRLPVQNRSDAALTMSYEALARMRDPVYGCVSQIFYLQQQVAYLQEEIAT 103
                  6***********************98689*****************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MTGLGSSCGA CKFLRRKCTS DCVFAPYFCY DEAATHFAAV HKVFGASNVS KLLLRLPVQN  60
RSDAALTMSY EALARMRDPV YGCVSQIFYL QQQVAYLQEE IATLLGNQMV NLASGNSSTC  120
GSSKANSNSN SFSGLQVFPQ HHDIAVGTQY LQSQPELPVL LPQAGIASTN QGYSGHEMMD  180
IQMPPLHGGA EVNLFGDRST QDPLERFLQG IDQENLGYNP WLNDPSIAWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.15e-54LBD family protein