PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G07748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25196.2 Da PI: 4.9561 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.1 | 1.3e-37 | 7 | 103 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC+++Cv+ap+f+ +q + +fa+vhk+FGasnv+kll +lpe++r+da+ ++ yeA ar+rdPvyG+v+ i++lqqq++ l++e+++ Ro07_G07748 7 SCGACKFLRRKCTSGCVFAPHFCYDQaATHFAAVHKVFGASNVSKLLLSLPEQNRSDAALTMSYEALARMRDPVYGCVSQIFALQQQVAYLQEEIET 103 6************************9789****************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MTGLGSSCGA CKFLRRKCTS GCVFAPHFCY DQAATHFAAV HKVFGASNVS KLLLSLPEQN 60 RSDAALTMSY EALARMRDPV YGCVSQIFAL QQQVAYLQEE IETLLGNQMV NLASGNSSTC 120 GSSEANSNSN SFSGLQVFPQ HHDISVWTQY LQSQPELPVL LPQAGMASTN QGNSSHEIDI 180 QMPPLHAWEE ANLFGNRSTQ YPLERFLEGI DQENLGYNPW LNDPSIAWN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 6e-55 | LBD family protein |