PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G06913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 25548.2 Da PI: 5.1256 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.6e-19 | 26 | 77 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe ++++ +++ + A++lgL+ rqV +WFqNrRa++k Ro07_G06913 26 RRFSDEQIKLLESIFELDSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 77 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.9 | 1.4e-38 | 24 | 115 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq+klLE+ Fe ++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L+++yd l+++ e+L++e+++L +l++ Ro07_G06913 24 NSRRFSDEQIKLLESIFELDSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRNEYDLLASKFESLKEEKQSLLIQLEK 115 569***********************************************************************************998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MERETESLDT HSTAKRKKAN KGKNSRRFSD EQIKLLESIF ELDSKLEPRR KVQVARELGL 60 QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRN EYDLLASKFE SLKEEKQSLL IQLEKLNDLV 120 GKTKDDDANT DGRDLESSSD KDGNCETREE RQSNLESHKN ITSNDVGDEE EHDQQLMNMC 180 QVEAIVSPED WHRFDSSGLF DPSRSSIATS QWLNFWIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 80 | RRARWKSKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-45 | HD-ZIP family protein |