PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G06810
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 378aa    MW: 41618.2 Da    PI: 6.6496
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G06810genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29154215159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp ++eitY+g+H+++
  Ro07_G06810 154 LDDGFSWRKYGQKDILGAKHPRGYYRCTHRnvqGCLATKQVQRSDEDPMILEITYRGRHTCS 215
                  59***************************98999**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MEKYYNMGVN WEHKTSLVNE LTQGRELARQ LQMHLNVASN SNPSTTTQTA LARDLLIQKI  60
IASYEKALTI LNSSSYAPIA VAVEQQQQQQ PTFTVAASTG VVTIRMADSP PSLNGSPRSE  120
DSDDHKDPSR KRKGLARWTK QVRVTSGMGL EGPLDDGFSW RKYGQKDILG AKHPRGYYRC  180
THRNVQGCLA TKQVQRSDED PMILEITYRG RHTCSQAASS TTITSPPPRP ISSLPDQTPE  240
PPQINQPPQS SQHNMLLSLP EGLRVITEGL DTSQDHHRDE LFPSFNNNDY VGNFSPSITM  300
PTTAASISGT NYFSLPSQQG FGGNQNLHTS AATESHEIIS AATSATNSPT VGLDFPFAQA  360
DHQILYPNFT FDDPGFFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-55WRKY family protein