PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 704aa    MW: 77810.4 Da    PI: 7.4481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04799genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06291311526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  Ro07_G04799 291 PCPEFRK-GSCQKGDVCEYAHG 311
                  8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    
MVYVSNRNMK SSLLYDDFQN MTFSMCKGSK NTIVSSNFIM ESEFQKQNGV SKSSVLVELS  60
ASDNLDAFRI EVEEKGFPVD EASFWYGRRI GSKKMGFEER TPLMIAAMFG STKVLKYILD  120
SGKVDVNRSC GSDRVTALHC ATAGGSPSSL EAVKLLLDSS ADANCVNANG NKPVDLIAPT  180
LKSPCNSRRK AMEMLLKGDM SVVESDQIDD QEVPSLQLLK EGSEKKDYPI DIALPDINNG  240
IYGSDEFRMY TFKVKPCSRA YSHDWTECPF VHPGENARRR DPRKYPYSCV PCPEFRKGSC  300
QKGDVCEYAH GVFESWLHPA QYRTRLCKDE TGCTRKVCFF AHKPEELRPV YASTGSAMPS  360
PRSMSSSGAD MTTMSPLALG SPSLSMPTAS TPPMSPIAAS SSPKNGGLWQ NKVNLTPPAL  420
QLPGSRLKSA LSARDLDLEM EFLGRENHAS QQQQQQQQQQ QQQQQHMWDE ISRLSSPSCY  480
NNSRMGELKP TNLDDLFGSF DPSLLSQLQA LSTQTQLQSS PGLQSRQNMN QLRSSYPSNM  540
SSSPVRKPSS FGLDSPAALA AAVMNSRSAA FAKRSHSFVD RGAVTHLPGF TSAANSNTMM  600
SSSDWNSPSG KLDWGIQGDD LNKLRKSASF GFRSNNAGTP NNMMPSAIDE PDVSWVNSLV  660
KDVSSERSDM FGAERQKYHH QNKGVHEMLP SWAEQMYIEQ EQRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein