PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04799

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 704aa MW: 77810.4 Da PI: 7.4481

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04799	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	291	311	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Ro07_G04799 291 PCPEFRK-GSCQKGDVCEYAHG 311 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MVYVSNRNMK SSLLYDDFQN MTFSMCKGSK NTIVSSNFIM ESEFQKQNGV SKSSVLVELS 60 ASDNLDAFRI EVEEKGFPVD EASFWYGRRI GSKKMGFEER TPLMIAAMFG STKVLKYILD 120 SGKVDVNRSC GSDRVTALHC ATAGGSPSSL EAVKLLLDSS ADANCVNANG NKPVDLIAPT 180 LKSPCNSRRK AMEMLLKGDM SVVESDQIDD QEVPSLQLLK EGSEKKDYPI DIALPDINNG 240 IYGSDEFRMY TFKVKPCSRA YSHDWTECPF VHPGENARRR DPRKYPYSCV PCPEFRKGSC 300 QKGDVCEYAH GVFESWLHPA QYRTRLCKDE TGCTRKVCFF AHKPEELRPV YASTGSAMPS 360 PRSMSSSGAD MTTMSPLALG SPSLSMPTAS TPPMSPIAAS SSPKNGGLWQ NKVNLTPPAL 420 QLPGSRLKSA LSARDLDLEM EFLGRENHAS QQQQQQQQQQ QQQQQHMWDE ISRLSSPSCY 480 NNSRMGELKP TNLDDLFGSF DPSLLSQLQA LSTQTQLQSS PGLQSRQNMN QLRSSYPSNM 540 SSSPVRKPSS FGLDSPAALA AAVMNSRSAA FAKRSHSFVD RGAVTHLPGF TSAANSNTMM 600 SSSDWNSPSG KLDWGIQGDD LNKLRKSASF GFRSNNAGTP NNMMPSAIDE PDVSWVNSLV 660 KDVSSERSDM FGAERQKYHH QNKGVHEMLP SWAEQMYIEQ EQRA

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MVYVSNRNMK SSLLYDDFQN MTFSMCKGSK NTIVSSNFIM ESEFQKQNGV SKSSVLVELS  60
ASDNLDAFRI EVEEKGFPVD EASFWYGRRI GSKKMGFEER TPLMIAAMFG STKVLKYILD  120
SGKVDVNRSC GSDRVTALHC ATAGGSPSSL EAVKLLLDSS ADANCVNANG NKPVDLIAPT  180
LKSPCNSRRK AMEMLLKGDM SVVESDQIDD QEVPSLQLLK EGSEKKDYPI DIALPDINNG  240
IYGSDEFRMY TFKVKPCSRA YSHDWTECPF VHPGENARRR DPRKYPYSCV PCPEFRKGSC  300
QKGDVCEYAH GVFESWLHPA QYRTRLCKDE TGCTRKVCFF AHKPEELRPV YASTGSAMPS  360
PRSMSSSGAD MTTMSPLALG SPSLSMPTAS TPPMSPIAAS SSPKNGGLWQ NKVNLTPPAL  420
QLPGSRLKSA LSARDLDLEM EFLGRENHAS QQQQQQQQQQ QQQQQHMWDE ISRLSSPSCY  480
NNSRMGELKP TNLDDLFGSF DPSLLSQLQA LSTQTQLQSS PGLQSRQNMN QLRSSYPSNM  540
SSSPVRKPSS FGLDSPAALA AAVMNSRSAA FAKRSHSFVD RGAVTHLPGF TSAANSNTMM  600
SSSDWNSPSG KLDWGIQGDD LNKLRKSASF GFRSNNAGTP NNMMPSAIDE PDVSWVNSLV  660
KDVSSERSDM FGAERQKYHH QNKGVHEMLP SWAEQMYIEQ EQRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein