PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04784
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 310aa    MW: 34289.7 Da    PI: 7.802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42.1e-1420621055
          AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Ro07_G04784 20 RSWGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 62
                 68**********954...5**********************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MKTTHPHLTL PNAKTTTKAR SWGKWVAEIR EPRKRTRKWL GTFATAEDAA RAYDRAAIIL  60
YGSRAQLNLQ PSGSNSSQSS TRGSSSSSSS SSSTQTLRPL LPRPSGYTGF ACNFPSSAHH  120
PALAATASAS FGFVPYGSVG VYPNSSVQPS HQQPRHEHQH MENLNPPYQQ QQQQQQQQQV  180
VVHQQQQFHH YPLSSNGCGD VTHPSTTTSY PNASDHPHQQ QYQVHQQQLD QNQSCTSYDY  240
MNSIVGSASN SSLSLSSQPM VVAPAVSDPM MIGQVGPMSP MWPLMNEEES AQSLWDYYGD  300
PFFLDFKGYD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.12e-14ERF family protein