PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04761

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 213aa MW: 23430.9 Da PI: 6.8412

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04761	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	8.8e-44	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+Ca+dC++ap fp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i++lq+q+++l+ +la+++ Ro07_G04761 41 PCASCKLLRRRCAHDCIFAPFFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRTDAVSSLVYEANARVRDPVYGCVGAISSLQKQVSELQMQLAVAQ 138 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Ro07_G04761 139 AE 140 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
SIFSNLFTCF QSHILNCYSP LLSTALQTFL GSKMGGNGTS PCASCKLLRR RCAHDCIFAP 60 FFPSDDPHKF AIVHKVFGAS NVSKMLQELP VHQRTDAVSS LVYEANARVR DPVYGCVGAI 120 SSLQKQVSEL QMQLAVAQAE ILCIQAQQEP MVLPTQQIDT CTNDEKSYVL HYNLPQYLNF 180 PSSSSGYVIP DSLKMEGIFG HDMIFSASSI VPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-76	LBD family protein