PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04723

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 266aa MW: 29117.9 Da PI: 7.3742

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04723	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.3e-42	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+a+l++++ Ro07_G04723 52 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQADLNAVR 149 7**********************************************************************************************998 PP DUF260 99 ee 100 e Ro07_G04723 150 GE 151 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MSRERERFDF DEIGKKLKRE IDASNSSSSY HHHQMGRRHM LGPPGTLNTI TPCAACKLLR 60 RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQQQVQS LQADLNAVRG EILKYKYREA NLMDPSSHHH HQVASLFSTP 180 SGGAVSVASL PPTTQQPPPP PPPPPLPPTS SSSSMYTQPN SAADYSTLSS ENVSYFVLLF 240 HAITEADLSV AMLVIDHELM PAGSGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-84	LBD family protein