PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04679

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 349aa MW: 39071.4 Da PI: 6.4356

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04679	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	8.4e-28	178	238	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ g +fpr+YYrCt++ +Cp+kk+v+r ++dp ++e++Y+g+H+++ Ro07_G04679 178 EDGFTWRKYGQKEIMGCRFPRGYYRCTHQklyNCPAKKQVQRLDNDPLTFEVMYRGDHTCH 238 7**************************999*************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDNISETISL IHHGCNLARD LESNLPNLAN QPENLFPISK SLDEIMRIFR EARERLHSSS 60 AAHQDPLSSY VHVAQQQQQI DASLQEWLRC NYTQAMEDHY IQTQRLISEK SSAATPSDIR 120 DSGGDQIQAM DRIITVVSHD MNVSSSSQSR PRRRKDLGEI RKLTVPAPRI GNTEIPPEDG 180 FTWRKYGQKE IMGCRFPRGY YRCTHQKLYN CPAKKQVQRL DNDPLTFEVM YRGDHTCHMS 240 STAPSTLPPP PDQIKQDNMT QNHAATTQPL GSTWLSMDFN TSVGGSSGGG DGVGTSTATT 300 TRYGKEVEFP VVDFADAMFN SGSSSSNSMD FIFTNTSVEN KWESGDKKN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDNISETISL IHHGCNLARD LESNLPNLAN QPENLFPISK SLDEIMRIFR EARERLHSSS  60
AAHQDPLSSY VHVAQQQQQI DASLQEWLRC NYTQAMEDHY IQTQRLISEK SSAATPSDIR  120
DSGGDQIQAM DRIITVVSHD MNVSSSSQSR PRRRKDLGEI RKLTVPAPRI GNTEIPPEDG  180
FTWRKYGQKE IMGCRFPRGY YRCTHQKLYN CPAKKQVQRL DNDPLTFEVM YRGDHTCHMS  240
STAPSTLPPP PDQIKQDNMT QNHAATTQPL GSTWLSMDFN TSVGGSSGGG DGVGTSTATT  300
TRYGKEVEFP VVDFADAMFN SGSSSSNSMD FIFTNTSVEN KWESGDKKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	155	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	4e-51	WRKY family protein